Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K13
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 210 8e-56
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 210 1e-55
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 29 0.36
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 27 1.5
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 3.4
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 26 3.4
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 5.9
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 5.9
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 210 bits (514), Expect = 8e-56
Identities = 97/150 (64%), Positives = 116/150 (77%)
Frame = -3
Query: 568 YEQVSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPVHVIRINKMLSCAGADRLQTGMR 389
YEQ++SEALEA RIC NKYLVK GKD FH+R+R HP HV+RINKMLSCAGADRLQTGMR
Sbjct: 57 YEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMR 116
Query: 388 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 209
AFGKP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y
Sbjct: 117 HAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQY 176
Query: 208 EREEFEKLRDAGRFANDGCNVKYRPEHGPL 119
R+E+ + R G DGC K+ + G L
Sbjct: 177 ARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 210 bits (513), Expect = 1e-55
Identities = 97/150 (64%), Positives = 116/150 (77%)
Frame = -3
Query: 568 YEQVSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPVHVIRINKMLSCAGADRLQTGMR 389
YEQ++SEALEA RIC NKYLVK GKD FH+R+R HP HV+RINKMLSCAGADRLQTGMR
Sbjct: 57 YEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMR 116
Query: 388 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 209
AFGKP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y
Sbjct: 117 HAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQY 176
Query: 208 EREEFEKLRDAGRFANDGCNVKYRPEHGPL 119
R+E+ + R G DGC K+ + G L
Sbjct: 177 ARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 29.5 bits (63), Expect = 0.36
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Frame = -3
Query: 466 LHPVHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 299
L P+ R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 298 QVIEALRRAKFKFPGRQKIYVSK 230
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 342 PIRTRATVPWGFPNAPRIPVWSLSAPA---HDNILLMRMTWTGCSLIRMWN*SLPQFFTR 512
P+RT + WG+ N IP+W + PA + I +T +R + +L +FFTR
Sbjct: 81 PLRTLSRW-WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTR 137
Query: 513 YL 518
L
Sbjct: 138 KL 139
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 70 KYFTHYVVHFGISSRHRGVHALGGT*RCIHR*QN 171
KY H+ VH H + ++ G RCI + N
Sbjct: 589 KYIHHFWVHTWFDKTHPDIESITGIIRCIDKVPN 622
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 326 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA---RQHFIDADDMD 457
RH G+S +++ C L + +T LE + S A ++ D DMD
Sbjct: 94 RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLAVEDEANYPDILDMD 140
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 363 VPWGFPNAPRIPV 401
+ W FPNAP IPV
Sbjct: 46 IKWIFPNAPSIPV 58
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = -1
Query: 204 VRNLRSYVMLDVLLTMDATSSTAQSMDPS 118
V +LRS+++ + L+++ ++SST + PS
Sbjct: 176 VASLRSHILFNALISILSSSSTLHKLYPS 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,357
Number of Sequences: 5004
Number of extensions: 50479
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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