Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K13
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 215 2e-56
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 210 8e-55
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 207 5e-54
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 1.5
02_01_0759 - 5628913-5630870,5631023-5631047 30 1.5
09_04_0327 + 16700235-16700312,16701756-16701978,16702488-167027... 29 2.6
06_01_0499 - 3581145-3582425 29 3.4
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 4.6
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 28 4.6
09_06_0319 - 22293869-22293906,22294539-22295808 27 8.0
09_02_0020 + 3042502-3042980,3043068-3043176,3043290-3043476,304... 27 8.0
08_02_0567 + 18769742-18769790,18769928-18771351 27 8.0
06_02_0084 - 11547820-11548773 27 8.0
01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411 27 8.0
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 215 bits (525), Expect = 2e-56
Identities = 101/149 (67%), Positives = 115/149 (77%)
Frame = -3
Query: 565 EQVSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPVHVIRINKMLSCAGADRLQTGMRG 386
E VSSEALEA RI CNKY+ KN GKD FH+R+R+HP HV+RINKMLSCAGADRLQTGMRG
Sbjct: 58 ENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 117
Query: 385 AFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYE 206
AFGKPQGT ARV IGQ ++SVR + EALRRAKFKFPGRQKI S+KWGFTK+
Sbjct: 118 AFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFT 177
Query: 205 REEFEKLRDAGRFANDGCNVKYRPEHGPL 119
REE+ KL+ GR +DG N + HG L
Sbjct: 178 REEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 210 bits (512), Expect = 8e-55
Identities = 97/147 (65%), Positives = 112/147 (76%)
Frame = -3
Query: 565 EQVSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPVHVIRINKMLSCAGADRLQTGMRG 386
E VSSEALEA RI CNKY+ K+ GKD FH+R+ HP HV+RINKMLSCAGADRLQTGMRG
Sbjct: 365 ENVSSEALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRG 424
Query: 385 AFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYE 206
AFGKP GT ARVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++
Sbjct: 425 AFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFK 484
Query: 205 REEFEKLRDAGRFANDGCNVKYRPEHG 125
R+E+ KL+ GR DG N K HG
Sbjct: 485 RDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 207 bits (505), Expect = 5e-54
Identities = 95/141 (67%), Positives = 110/141 (78%)
Frame = -3
Query: 565 EQVSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPVHVIRINKMLSCAGADRLQTGMRG 386
E V+SEALEA RI CNKY+ K+ GKD FH+R+R+HP HV+RINKMLSCAGADRLQTGMRG
Sbjct: 54 ENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 113
Query: 385 AFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYE 206
AFGKPQGT ARV IGQ ++SVR EALRRAKFKFPGRQKI S+KWGFTK+
Sbjct: 114 AFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFS 173
Query: 205 REEFEKLRDAGRFANDGCNVK 143
R+E+ +L+ GR DG N K
Sbjct: 174 RDEYVRLKSEGRIMPDGVNAK 194
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +3
Query: 333 MGCPIRTRATVPWGFPNAPRIPVWSLSAPAH 425
+ CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 312 SLERTDIMGCPIRT---RATVPWGFPNAPRIPVWSLSAPAHDNILLMRMTWTGCSLIRMW 482
SLER DI CP+ T A V G PN + V S S +D +R CS I+
Sbjct: 233 SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDG---LRAIGRSCSKIQAL 289
Query: 483 N 485
N
Sbjct: 290 N 290
>09_04_0327 +
16700235-16700312,16701756-16701978,16702488-16702730,
16702815-16702865,16702965-16703225,16703319-16703371,
16703446-16703815,16703906-16704750
Length = 707
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 82 HYVVHFGISSRHRGVHALGGT*RCI 156
+Y+VHF + ++ +G LGGT CI
Sbjct: 260 YYIVHFFLRNKRQGWQLLGGTVLCI 284
>06_01_0499 - 3581145-3582425
Length = 426
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 178 HHVASQIPHVRTW*SPTS*IHRSSGDQG 261
H A+++ HVR W SPTS + D G
Sbjct: 116 HGAAAELAHVRAWWSPTSHAAAADWDDG 143
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 379 GKPQGTVARVRIGQPIMSVRSSD 311
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 418 QRTTTFY*CG*HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQNSP 561
+ TTT CG HGR ++SS L+++++ G+ +Y + PQ P
Sbjct: 134 RETTTTSSCGEHGRILLSSP-SPSLFKANVLGSLAYKYITMGIPQWFP 180
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 379 GKPQGTVARVRIGQPIMSVRSSD 311
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>09_02_0020 +
3042502-3042980,3043068-3043176,3043290-3043476,
3043690-3043784
Length = 289
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -3
Query: 352 VRIGQPIMSVRSSDR---WKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLR 182
+R+G P S +R W + E R K GR+ ++WG ++ ++ R
Sbjct: 111 MRVGPPKQSDAGEERRGAWSRRSSEMWERRGEKRRGRKGSMRIQRWGQKRFSKKNINLHR 170
Query: 181 DAGRF 167
+A RF
Sbjct: 171 EAYRF 175
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = -3
Query: 394 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 242
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 430 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 302
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411
Length = 465
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = -3
Query: 427 SCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGR- 251
S G DR + G+P+ + VR P++ +++ W A + + + PG
Sbjct: 251 SSYGYDRSPKIVEMDTGRPKSRSSSVRTSPPVVDAGAAEEWYANSVSSPLLPFHQLPGAP 310
Query: 250 QKIYVSKKWGFTKYEREEFEKLRDA 176
+I F +Y+ EK R A
Sbjct: 311 PRISAPSARHFPEYDWCPLEKPRPA 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,469
Number of Sequences: 37544
Number of extensions: 369517
Number of successful extensions: 1043
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -