Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K11
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 111 2e-25
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 111 2e-25
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 111 2e-25
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 111 3e-25
02_02_0196 + 7685933-7685961,7686086-7686284 44 9e-05
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 42 3e-04
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 31 0.49
12_01_0981 + 9931542-9931606,9931779-9933105 31 0.65
01_01_0251 + 2058443-2058565,2058870-2059087,2060436-2060498,206... 29 2.6
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 28 4.6
06_03_1194 + 28305388-28305472,28305603-28305682,28305771-283058... 27 8.0
03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228 27 8.0
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 111 bits (268), Expect = 2e-25
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +1
Query: 82 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 261
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 262 VHCTVRGAK 288
+ TVRG K
Sbjct: 69 CYVTVRGEK 77
Score = 105 bits (253), Expect = 1e-23
Identities = 49/64 (76%), Positives = 54/64 (84%)
Frame = +2
Query: 290 AEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPG 469
A ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R G
Sbjct: 78 AMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAG 137
Query: 470 FNVA 481
+ VA
Sbjct: 138 YRVA 141
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 111 bits (268), Expect = 2e-25
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +1
Query: 82 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 261
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 262 VHCTVRGAK 288
+ TVRG K
Sbjct: 69 CYVTVRGEK 77
Score = 44.4 bits (100), Expect = 5e-05
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +2
Query: 407 KYDPSIGIYGLDFYVVLGRPGFNVA 481
+YDPS GIYG+DFYVVL R G+ VA
Sbjct: 116 RYDPSTGIYGMDFYVVLERAGYRVA 140
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 111 bits (268), Expect = 2e-25
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +1
Query: 82 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 261
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 262 VHCTVRGAK 288
+ TVRG K
Sbjct: 69 CYVTVRGEK 77
Score = 105 bits (253), Expect = 1e-23
Identities = 49/64 (76%), Positives = 54/64 (84%)
Frame = +2
Query: 290 AEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPG 469
A ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R G
Sbjct: 78 AMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAG 137
Query: 470 FNVA 481
+ VA
Sbjct: 138 YRVA 141
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 111 bits (267), Expect = 3e-25
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +1
Query: 82 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 261
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 94
Query: 262 VHCTVRGAK 288
+ TVRG K
Sbjct: 95 CYVTVRGEK 103
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 290 AEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 409
A ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 104 AMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 43.6 bits (98), Expect = 9e-05
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 410 YDPSIGIYGLDFYVVLGRPGFNVA 481
YDPS GIYG+DFYVVL R G+ VA
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVA 34
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +1
Query: 82 NVMRNLHIRKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 252
NV + + K+ +N +G E+G+ L A K L +TGQ PV +KA+ +V SF IR
Sbjct: 98 NVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGN 157
Query: 253 KIAVHCTVRG 282
I + T+RG
Sbjct: 158 TIGIAVTLRG 167
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 31.1 bits (67), Expect = 0.49
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = -1
Query: 300 ISSALSTSNSAMD-SNLFITTNTKRPYSVSGL*EYRLLAG---KLFQHLSGTS*PITRFS 133
+ +S A+D SN+ TN K+P +VS + + LAG + ++ S + P+TR
Sbjct: 953 LGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLL 1012
Query: 132 DTDVQAEFSD 103
DV+ ++S+
Sbjct: 1013 QKDVKYKWSE 1022
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 472 ETWSTKNNVEIQTIDTN--RWIIFDTQIDVFLDTKAKVACGREVITSQFIFSYFQSSLKD 299
+ ++ K+ +EI N ++ D+ ID F DT V +T + YF S LKD
Sbjct: 258 QRFAAKSKIEITETFRNLKQYGSVDSYIDKFEDTMTLVKRSNPTLTKDYFLDYFISGLKD 317
>01_01_0251 +
2058443-2058565,2058870-2059087,2060436-2060498,
2060499-2060590,2060697-2060938
Length = 245
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 420 DGSYLIPKSMCSWIPKPKLPVAEKLSRLNSYSLTFNPLS-RISSALSTSNSAMDSNLFIT 244
D + +P C + P ++P L L++ LT++PLS +++ + +S + +T
Sbjct: 124 DSEFFVPDDRCRY-PIYRIPTGPTLCDLDACFLTYHPLSTQLTGGICPEPKGNNSGVPVT 182
Query: 243 T 241
T
Sbjct: 183 T 183
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 27.9 bits (59), Expect = 4.6
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = -1
Query: 369 KLPVAEKLSRLNSYSLTFNPLSRISSALSTSNSAMD-SNLFITTNTKRPYSVSGL*EYRL 193
KL + ++ + + + + +S A+D SN+ TN K+P +VS + +
Sbjct: 398 KLQEHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLG 457
Query: 192 LAG---KLFQHLSGTS*PITRFSDTDVQAEFSD 103
LAG + ++ S + +TR DV ++S+
Sbjct: 458 LAGYYRRFIENFSKIAKSMTRLLQKDVNYKWSE 490
>06_03_1194 +
28305388-28305472,28305603-28305682,28305771-28305839,
28305936-28305993,28306082-28306134,28306229-28306271,
28306360-28306421,28306914-28307027,28307183-28307285,
28307377-28307426,28308138-28308266,28308340-28308591,
28308684-28308763,28309040-28309166,28309247-28309390,
28309849-28310034
Length = 544
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 302 GFPQHLAPRTVQWTAIFSLRRIP 234
GFPQ +P T QW + S ++IP
Sbjct: 130 GFPQAQSPATSQWFSSKSSKKIP 152
>03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228
Length = 628
Score = 27.1 bits (57), Expect = 8.0
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = -1
Query: 381 IPKPKLPVAEKLSRLNSYSLTFNPLSRISSALSTSNSAMDSNLFITTNTKR-----PYSV 217
I K + VAE L+ +NSY++T+ L+ L +A ++ I T Y
Sbjct: 430 ILKIAIDVAEGLAFMNSYAITYRDLNARRILLDRQGNACLGDMGIVTPCNNAGEVTEYET 489
Query: 216 SGL*EYRLLAGKLFQHL 166
SG YR LA ++ ++L
Sbjct: 490 SG---YRWLAPEVIKNL 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,039,903
Number of Sequences: 37544
Number of extensions: 264393
Number of successful extensions: 712
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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