Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K11
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   134   3e-32
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   134   4e-32
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   0.77 
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    28   4.1  
U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone...    27   7.2  
U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone...    27   7.2  
AF083229-1|AAD03687.1|  288|Caenorhabditis elegans nuclear recep...    27   7.2  
U21317-12|AAN60539.1|  697|Caenorhabditis elegans Hypothetical p...    27   9.5  
U21317-11|AAN60538.3|  509|Caenorhabditis elegans Hypothetical p...    27   9.5  
U21317-10|AAA62529.1|  753|Caenorhabditis elegans Hypothetical p...    27   9.5  
AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  134 bits (324), Expect = 3e-32
 Identities = 63/71 (88%), Positives = 67/71 (94%)
 Frame = +1

Query: 76  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 255
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 256 IAVHCTVRGAK 288
           IAVHCTVRG K
Sbjct: 75  IAVHCTVRGPK 85



 Score =  114 bits (275), Expect = 3e-26
 Identities = 51/64 (79%), Positives = 58/64 (90%)
 Frame = +2

Query: 290 AEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPG 469
           AEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+DFYVVL R G
Sbjct: 86  AEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAG 145

Query: 470 FNVA 481
             +A
Sbjct: 146 RRIA 149


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  134 bits (323), Expect = 4e-32
 Identities = 63/70 (90%), Positives = 66/70 (94%)
 Frame = +1

Query: 79  KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 258
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 259 AVHCTVRGAK 288
           AVHCTVRG K
Sbjct: 76  AVHCTVRGPK 85



 Score =  112 bits (270), Expect = 1e-25
 Identities = 50/64 (78%), Positives = 57/64 (89%)
 Frame = +2

Query: 290 AEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPG 469
           AEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+DFYVVL R G
Sbjct: 86  AEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNG 145

Query: 470 FNVA 481
             V+
Sbjct: 146 VRVS 149


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 287 SAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 430
           SAEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 358 SAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 330 YSLTFNPLSRISSALSTSNSAMDSNLFITTN 238
           Y +++  L+ ++S  S+SNS  D+N F T N
Sbjct: 6   YPMSYADLTPVTSCSSSSNSEADANNFSTKN 36


>U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform b protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = -1

Query: 378 PKPKLPVAEKLSRLNSYSLTFNPLSRISSALSTSNSAMDSNLFITTNTKRP 226
           P P++P+A+K+  L  +S  F  L  +  +++  +  + ++  ++ +   P
Sbjct: 182 PLPEVPLADKVLLLKKFSSAFTLLGTLQRSMALPHFVLPNDQVLSISASHP 232


>U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform a protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = -1

Query: 378 PKPKLPVAEKLSRLNSYSLTFNPLSRISSALSTSNSAMDSNLFITTNTKRP 226
           P P++P+A+K+  L  +S  F  L  +  +++  +  + ++  ++ +   P
Sbjct: 182 PLPEVPLADKVLLLKKFSSAFTLLGTLQRSMALPHFVLPNDQVLSISASHP 232


>AF083229-1|AAD03687.1|  288|Caenorhabditis elegans nuclear receptor
           NHR-14 protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = -1

Query: 378 PKPKLPVAEKLSRLNSYSLTFNPLSRISSALSTSNSAMDSNLFITTNTKRP 226
           P P++P+A+K+  L  +S  F  L  +  +++  +  + ++  ++ +   P
Sbjct: 35  PLPEVPLADKVLLLKKFSSAFTLLGTLQRSMALPHFVLPNDQVLSISASHP 85


>U21317-12|AAN60539.1|  697|Caenorhabditis elegans Hypothetical
           protein B0495.10c protein.
          Length = 697

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 251 SLRRIPKDLTVYLAFENTGCWPVS--CSSTLAARVSLSPDSPTQ 126
           +LR +P+ +  Y+   N    P    C S L    SL PD PT+
Sbjct: 603 ALRHVPQHMVQYMHNANIAAKPPIQVCRSPLFHSSSLIPDKPTE 646


>U21317-11|AAN60538.3|  509|Caenorhabditis elegans Hypothetical
           protein B0495.10b protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 251 SLRRIPKDLTVYLAFENTGCWPVS--CSSTLAARVSLSPDSPTQ 126
           +LR +P+ +  Y+   N    P    C S L    SL PD PT+
Sbjct: 365 ALRHVPQHMVQYMHNANIAAKPPIQVCRSPLFHSSSLIPDKPTE 408


>U21317-10|AAA62529.1|  753|Caenorhabditis elegans Hypothetical
           protein B0495.10a protein.
          Length = 753

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 251 SLRRIPKDLTVYLAFENTGCWPVS--CSSTLAARVSLSPDSPTQ 126
           +LR +P+ +  Y+   N    P    C S L    SL PD PT+
Sbjct: 603 ALRHVPQHMVQYMHNANIAAKPPIQVCRSPLFHSSSLIPDKPTE 646


>AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical
           protein Y4C6B.2a protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 105 DMKIPHNIFRIVFRSLLLLFIFF 37
           DMK PH+  R +  + +++FIF+
Sbjct: 226 DMKKPHHFSRSIIIAFIIIFIFY 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,224,782
Number of Sequences: 27780
Number of extensions: 235921
Number of successful extensions: 635
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)