Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K10
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.5  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   6.5  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 298 PDGHHGESFPLLNRKPKGRKENNRWQKNIG 387
           P GHH  S PLL     G    +R + N G
Sbjct: 516 PSGHHASSAPLLAATLAGGLCPHRRRANSG 545


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +3

Query: 333 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPESKVFYLKMKGDY 512
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 513 YRY 521
           + Y
Sbjct: 500 FDY 502


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 53  TFSVFLLRRTIYY 15
           TF V + RRT+YY
Sbjct: 222 TFVVIIRRRTLYY 234


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 53  TFSVFLLRRTIYY 15
           TF++ + RRT+YY
Sbjct: 185 TFTIQIRRRTLYY 197


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 53  TFSVFLLRRTIYY 15
           TF++ + RRT+YY
Sbjct: 185 TFTIQIRRRTLYY 197


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 53  TFSVFLLRRTIYY 15
           TF++ + RRT+YY
Sbjct: 185 TFTIQIRRRTLYY 197


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 53  TFSVFLLRRTIYY 15
           TF++ + RRT+YY
Sbjct: 185 TFTIQIRRRTLYY 197


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 53  TFSVFLLRRTIYY 15
           TF++ + RRT+YY
Sbjct: 185 TFTIQIRRRTLYY 197


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 53  TFSVFLLRRTIYY 15
           TF++ + RRT+YY
Sbjct: 185 TFTIQIRRRTLYY 197


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 53  TFSVFLLRRTIYY 15
           TF++ + RRT+YY
Sbjct: 253 TFTIQIRRRTLYY 265


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 53  TFSVFLLRRTIYY 15
           TF++ + RRT+YY
Sbjct: 253 TFTIQIRRRTLYY 265


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +3

Query: 96  GHQ*NQYLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETG---VELSNEERNL 266
           GH  N +  S    V KEEL    KL +  E  D + ++   VT  G   + LS  +R +
Sbjct: 24  GHDGNLWAKSEGFEVSKEEL---TKLVQGFEEQDILTSS--GVTLAGNRYIYLSGTDRVI 78

Query: 267 LSVAYKNVVGARRSSWRVISSI 332
            +   K  V   +++  V+ S+
Sbjct: 79  RAKLGKVGVHCMKTTQAVVVSL 100


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 375 KEYRVKVEKELREICYDV 428
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 375 KEYRVKVEKELREICYDV 428
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,583
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)