Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K09
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 52  GPGRQGFTEGCDWFVAAGGEAY 117
           G  +  F+ GC  FVA  G+ Y
Sbjct: 409 GSNQIAFSRGCSGFVAFNGDQY 430


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 202 HHHEGLHTTSPYGISGRPQGWKWIAHH 122
           HHH+ L+  SPY +   P   K    H
Sbjct: 77  HHHQVLYQQSPYLMYENPDEEKRYQEH 103


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -3

Query: 217 YRGQ-PHHHEGLHTTSPYGISGRPQGWKWIAHHRSR----LHRPQPRT 89
           +RG  PHH  G HT  P    G P       HH+++    LH  QP T
Sbjct: 329 HRGSSPHHQHGNHTMGP--TMGPPHHHH---HHQTQSLQHLHYRQPPT 371


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 148 QGWKWIAHHRSRLHRPQPRTNHNL 77
           Q  ++I H +S  H P+P   H L
Sbjct: 317 QSTQYIRHIKSPYHTPEPDCIHEL 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,379
Number of Sequences: 438
Number of extensions: 4428
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)