Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K08
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 164 3e-41
07_01_0578 + 4295386-4296489,4297394-4297507 163 5e-41
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 34 0.050
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.067
07_03_1721 - 29023979-29025295 29 1.4
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 29 2.5
06_03_0865 - 25516072-25517007 29 2.5
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 3.3
03_01_0092 - 731069-731434,731569-733080 28 4.4
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 28 4.4
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 27 5.8
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 27 5.8
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683... 27 5.8
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 5.8
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 164 bits (399), Expect = 3e-41
Identities = 76/134 (56%), Positives = 89/134 (66%)
Frame = +3
Query: 9 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 188
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 189 XXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSD 368
ARGH +E +PE PLVVSD ++ I KT Q++ L++I A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
Query: 369 VLKVYKSQRLRAGK 410
K S +RAGK
Sbjct: 183 AEKTKDSVAIRAGK 196
Score = 34.7 bits (76), Expect = 0.038
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1
Query: 409 KWKMRNRRRVQRKGPLIIY 465
K KMRNRR + RKGPLI+Y
Sbjct: 196 KGKMRNRRYINRKGPLIVY 214
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 163 bits (397), Expect = 5e-41
Identities = 74/134 (55%), Positives = 88/134 (65%)
Frame = +3
Query: 9 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 188
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 64 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHL 123
Query: 189 XXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSD 368
ARGH +E +PELPLV+SD + I KT QA+ L+++ A++D
Sbjct: 124 RRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYAD 183
Query: 369 VLKVYKSQRLRAGK 410
K S +R GK
Sbjct: 184 AEKAKDSVGIRPGK 197
Score = 36.3 bits (80), Expect = 0.012
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 403 PVKWKMRNRRRVQRKGPLIIY 465
P K KMRNRR + RKGPLI+Y
Sbjct: 195 PGKGKMRNRRYINRKGPLIVY 215
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 34.3 bits (75), Expect = 0.050
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 127 PPRHMLPNAPCPDLWVPPP 71
PPRH++P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.067
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 21 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 131
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 154 HGLVGANIRPPRHMLPNAPCPDLWVP-PPRTRGIRATARPV 35
+G+VG + PP H +P P P P P GI A A PV
Sbjct: 227 NGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267
>12_02_0803 +
23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 166 CQRLHGLVGANIRPPRHMLPNAPC 95
C L+G VG +IRP + + PN C
Sbjct: 256 CSHLNGPVGHDIRPIKRLKPNQEC 279
>06_03_0865 - 25516072-25517007
Length = 311
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 312 SPGPCPRPLTATRESSQQYAL*PEXXXXXXXXXXXXXRQHVSAVGSRDG 166
SP P P P A S+ QY PE +++++VG R G
Sbjct: 233 SPSPPPPPPPAAAASTTQYPFTPEFAAAMQEMIRAEVHKYMASVGVRAG 281
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -2
Query: 233 RYPGRCHGGG---HGSTSLP*VHATVPAPPRLGRRE 135
R+ HGG HG L HA P PP+ RR+
Sbjct: 47 RHEHPAHGGAQHAHGGEQLQLAHARTPTPPQQQRRQ 82
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 124 PRHMLPNAPCPDLWVPPPRTRGIRATARPVP 32
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 163 QRLHGLVGANIRPPRHMLPNAPCPDLWVPPPRTRGIRA 50
+ LHG A RPP L AP P PP G+ A
Sbjct: 44 EALHGAAAATARPPPVSL--APAPVAVAPPATPAGLSA 79
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 106 SVTCAAADVCSRRPSRGGAGTVA*TYGRDVLPWPPP 213
S+TC A V SRR +R G G A R+ PP
Sbjct: 176 SITCGANGVGSRRATRAGKGGAAAAAQREQHACQPP 211
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 178 TYGRDVL-PWPPPWQRPGYRPSFRLEGILLRR 270
TYG +L P+PPP P PS+ EG ++ R
Sbjct: 275 TYGTPLLQPFPPPTPPPSLTPSYN-EGPIISR 305
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 202 WPPPWQRPGYRPSFRLEGILLRR 270
WPPP P P L+GIL RR
Sbjct: 231 WPPPSFPPSSTPPSDLDGILSRR 253
>04_01_0519 +
6831912-6831978,6832333-6832488,6832748-6833098,
6833481-6833662,6833756-6834004,6834182-6834406,
6837492-6837791,6838642-6839215,6839959-6840059
Length = 734
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 261 VEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVL 374
V K+PE LV + K+Q + K R + A+S++L
Sbjct: 56 VTKVPETKLVANPKIQNVRDLKSLRRLSRSLLAFSNLL 93
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 79 PPPRTRGIRATARPVPQDSA 20
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,983
Number of Sequences: 37544
Number of extensions: 294919
Number of successful extensions: 1361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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