Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K08
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   177   2e-45
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   9.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  177 bits (432), Expect = 2e-45
 Identities = 81/133 (60%), Positives = 94/133 (70%)
 Frame = +3

Query: 12  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 191
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 192 XXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDV 371
                            QARGH+++++ E+PLVVSDKV+   KTK+AV+FLRR   W+D+
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADI 179

Query: 372 LKVYKSQRLRAGK 410
            KVY S+R RAGK
Sbjct: 180 EKVYNSKRNRAGK 192



 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 409 KWKMRNRRRVQRKGPLIIYNK 471
           K K+RNR+  Q+ GP++IY +
Sbjct: 192 KGKLRNRQHKQKLGPVVIYGQ 212


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 151 GLVGANIRPPRHMLPNAPCPDLWVPPPRTRG 59
           G+ GA   PP    P AP P +++PPP   G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 151 GLVGANIRPPRHMLPNAPCPDLWVPPPRTRG 59
           G+ GA   PP    P AP P +++PPP   G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 57  IPRVRGGGTHRSGQGAFGNMCRGG 128
           +P   GGG   S Q A GN C GG
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGG 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,980
Number of Sequences: 27780
Number of extensions: 189502
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)