Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K05
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   0.67 
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   2.0  
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    24   4.7  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    24   4.7  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    24   4.7  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   6.3  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    24   6.3  

>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 142 CIYALPLPIVLVRPESPNTIGKGAR-RDELRAS 237
           C+   P+P+++VRP+      K  R +D+ R S
Sbjct: 265 CLQKSPIPVIVVRPDRKRVRSKNKRLKDKTRKS 297


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 259 FTSGRVPHWHGARPSVPPYLLYW 191
           FT   +P +H  +PS+ P++  W
Sbjct: 348 FTIIGIPDYHSRKPSLKPFISRW 370


>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 188 PPIQ*VRGHGGTSSVPVWDSPGR 256
           PPI+    HGG SS    DS GR
Sbjct: 32  PPIRTSTKHGGGSSKNTGDSAGR 54


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 291 PGGF*WVFPGASRPGESHTGTELVPPCPLTYC 196
           PGG+  V     +PG    G +L P  P+  C
Sbjct: 56  PGGWLQVASKTCKPGSLIVGVDLAPIKPIPNC 87


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 235 WHGARPSVPPYLLYWGTPVS 176
           W G+ PS P +++  G P+S
Sbjct: 44  WMGSHPSGPSFVMQTGKPLS 63


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 260 LHVRASPTLARSSSLRAPLPIV--LGDSGLTNTIGK 159
           +HVRA+  L  +   R    I   LGDSGLT  IG+
Sbjct: 627 VHVRANKRLTPAEYNRNIFHIEFDLGDSGLTYDIGE 662


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 301 SGRPRGVLVGISGRFTSGRVPHWHGARPS 215
           +GR R  L G    + SGR P +  +RPS
Sbjct: 502 AGRIRVSLQGDDAVYVSGRSPSFAASRPS 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,053
Number of Sequences: 5004
Number of extensions: 29073
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)