Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K05
         (314 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001593-1|AAH01593.3|  393|Homo sapiens TP53I13 protein protein.      30   1.2  
AK075341-1|BAC11555.1|  393|Homo sapiens protein ( Homo sapiens ...    30   1.2  
AB110214-1|BAD08208.1|  393|Homo sapiens damage stimulated cytop...    30   1.2  
AB110209-1|BAD08203.1|  393|Homo sapiens damage stimulated cytop...    30   1.2  
AK126566-1|BAC86598.1|  197|Homo sapiens 3.-).  protein.               28   5.0  
X51330-1|CAA35714.1|  536|Homo sapiens protein ( Human mRNA for ...    28   6.6  
Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.        27   8.8  
AF272774-1|AAK58686.2|  679|Homo sapiens factor VII active site ...    27   8.8  
AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc fi...    27   8.8  

>BC001593-1|AAH01593.3|  393|Homo sapiens TP53I13 protein protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 181 PESPNTIGKGARRDELRASVGLART*SARKYPLKPPGAVR 300
           P  P++   GA+R  LRA++G   T SA ++P   PG+++
Sbjct: 194 PRQPSS--SGAKRRRLRAALGPQPTRSALRFPSASPGSLK 231


>AK075341-1|BAC11555.1|  393|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0020 fis, clone NT2RP1000255. ).
          Length = 393

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 181 PESPNTIGKGARRDELRASVGLART*SARKYPLKPPGAVR 300
           P  P++   GA+R  LRA++G   T SA ++P   PG+++
Sbjct: 194 PRQPSS--SGAKRRRLRAALGPQPTRSALRFPSASPGSLK 231


>AB110214-1|BAD08208.1|  393|Homo sapiens damage stimulated
           cytoplasmic protein1 protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 181 PESPNTIGKGARRDELRASVGLART*SARKYPLKPPGAVR 300
           P  P++   GA+R  LRA++G   T SA ++P   PG+++
Sbjct: 194 PRQPSS--SGAKRRRLRAALGPQPTRSALRFPSASPGSLK 231


>AB110209-1|BAD08203.1|  393|Homo sapiens damage stimulated
           cytoplasmic protein1 protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 181 PESPNTIGKGARRDELRASVGLART*SARKYPLKPPGAVR 300
           P  P++   GA+R  LRA++G   T SA ++P   PG+++
Sbjct: 194 PRQPSS--SGAKRRRLRAALGPQPTRSALRFPSASPGSLK 231


>AK126566-1|BAC86598.1|  197|Homo sapiens 3.-).  protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 303 AADGPGGF*WVFPGASRPGESHTGTELVPPCPLTYC 196
           AA  PG   W +   S PG    G +LV  C + YC
Sbjct: 21  AAPPPGSQGWFWWSFSIPGLYLLGVDLVTACDIRYC 56


>X51330-1|CAA35714.1|  536|Homo sapiens protein ( Human mRNA for
           transcription factor TFE3 (partial). ).
          Length = 536

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +3

Query: 228 PCQCGTRP----DVKRPEIPTKTPRGRPLHLGW 314
           PC CGT P      ++ E+ T +PR  P  + W
Sbjct: 461 PCPCGTHPCPGEGRRQDEVSTLSPRDCPSQVSW 493


>Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.
          Length = 3851

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 157  PLPIVLVRPESPNTIGKGARRDELRASVGLART*SARKYPLKPPGA 294
            P      R   PN +   ARRD L   +G A++   +  P+  PGA
Sbjct: 1719 PREAKFARYNLPNQVAPLARRDVLITQMGTAQSIGLKPGPVPEPGA 1764


>AF272774-1|AAK58686.2|  679|Homo sapiens factor VII active site
           mutant immunoconjugate protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 270 FPGASRPGESHTGTELVPPCPLTYCIGG 187
           FPG++ P +S   T   PPCP    +GG
Sbjct: 443 FPGSAEP-KSCDKTHTCPPCPAPELLGG 469


>AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc finger
            protein protein.
          Length = 3926

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 157  PLPIVLVRPESPNTIGKGARRDELRASVGLART*SARKYPLKPPGA 294
            P      R   PN +   ARRD L   +G A++   +  P+  PGA
Sbjct: 1794 PREAKFARYNLPNQVAPLARRDVLITQMGTAQSIGLKPGPVPEPGA 1839


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,686,287
Number of Sequences: 237096
Number of extensions: 1337018
Number of successful extensions: 2908
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2904
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)