Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K04
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 236 2e-63
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 235 4e-63
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.60
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 29 0.80
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 28 1.4
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 4.2
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 5.6
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 5.6
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 5.6
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 7.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.8
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 236 bits (577), Expect = 2e-63
Identities = 119/199 (59%), Positives = 152/199 (76%), Gaps = 2/199 (1%)
Frame = +2
Query: 11 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 190
EV D +G E+ GYV ++ GGNDKQGFPM QGVL RVRLL+ GH CYRPRRDGERKR
Sbjct: 35 EVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKR 94
Query: 191 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVR 370
KSVRGCIV +L+VLAL I+++G Q+IPGLTD VP+RLGPKRASKIR+ FNL KEDDVR
Sbjct: 95 KSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVR 154
Query: 371 RYVVKR-LLPAKEGKENAKPRYKAPKIQRLVTPVVLQ-RRTSIALSPSQKKRLAKRKSAE 544
++V++R ++P KEGK KP KAPKIQRLVTP LQ +R AL ++++ K +
Sbjct: 155 QFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFAL---KRRQAEKNREEA 208
Query: 545 ADYAKLLAQRKKESKVRRQ 601
A++A+L+A+R E+K +R+
Sbjct: 209 AEFAQLMAKRVAEAKQKRE 227
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 235 bits (575), Expect = 4e-63
Identities = 119/199 (59%), Positives = 152/199 (76%), Gaps = 2/199 (1%)
Frame = +2
Query: 11 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 190
EV D +G E+ GYV ++ GGNDKQGFPM QGVL RVRLL+ GH CYRPRRDGERKR
Sbjct: 35 EVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKR 94
Query: 191 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVR 370
KSVRGCIV +L+VLAL IV++G Q+IPGLTD VP+RLGPKRASKIR+ FNL KEDDVR
Sbjct: 95 KSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVR 154
Query: 371 RYVVKR-LLPAKEGKENAKPRYKAPKIQRLVTPVVLQ-RRTSIALSPSQKKRLAKRKSAE 544
++V++R ++P KEGK KP KAPKIQRLVTP LQ +R AL ++++ K +
Sbjct: 155 QFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFAL---KRRQAEKNREEA 208
Query: 545 ADYAKLLAQRKKESKVRRQ 601
A++A+L+A+R E+K +++
Sbjct: 209 AEFAQLMAKRVAEAKQKKE 227
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.60
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 380 VKRLLPAKEGKENA--KPRYKAPKIQRLVTPVVLQRRTSIALSPSQKKRLAKRKSAEADY 553
VK+ + K+ A KP K+ KI + + ++ + +SP + K+ AKR S+
Sbjct: 9 VKKSVKETASKKGAIEKPS-KSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPS 67
Query: 554 AKLLAQRKKESK 589
K + ++KK K
Sbjct: 68 KKSVKKQKKSKK 79
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 392 LPAKEGKENAKPRYKAPK-IQRLVTPVVLQRRTSIALSPSQKKRLA 526
LP++ K K YK P IQR PV+LQR+ I ++ + + A
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTA 301
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 464 PVVLQRRTSIALSPSQKKRLAKRKSAEADYAKLL 565
P+ +++R S L+ ++KKR AKR SA A A L+
Sbjct: 567 PIPVEKRASTVLN-TKKKRKAKRNSALAGLAALV 599
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 153 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 70
EWP +K +LLVRT + PC + P
Sbjct: 26 EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = +2
Query: 494 ALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIK 613
++SP K++ RK++ + +K +KK+ K +++++K
Sbjct: 119 SVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLK 158
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 416 NAKPRYKAPKIQRLVTPVVLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKE 583
N+ + APK +R+ PV+ + S +KK + SA A K A+ E
Sbjct: 30 NSNNPFLAPKTERVADPVMESMADDLFNSIQKKKEPSPASSASASPVKKSAEALAE 85
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 383 KRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRTSIALSPSQKKRLAKRKSAEADYAKL 562
K L AK ++ R + +++ ++LQRR A + ++ K+LAK++S +K+
Sbjct: 7 KNDLRAKLAEKIQTFRSQRKATEKVDRALLLQRRKEKAKARAEAKKLAKKESKAKQESKV 66
Query: 563 LA 568
A
Sbjct: 67 AA 68
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = -3
Query: 414 SLPSLAGKXXXXXXXXXXXXXFKLNNLRILDARL-GPRRRGTSPSVSPGISCAPLRTMTR 238
SLPS+ G+ N + ++ + P ++ TSP + + AP+ +
Sbjct: 35 SLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPKKATPAAVAPVEATSA 94
Query: 237 AKTERLASTMQP 202
T ++M P
Sbjct: 95 VDTSEAVASMTP 106
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 9.8
Identities = 18/94 (19%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +2
Query: 332 RKLFNLKKEDDVRRY-VVKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRTSIALSPS 508
+K K++++ R+ +RL +E K+ R K + Q+ +++ +
Sbjct: 626 QKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKER---EKKLKKQQQEA 682
Query: 509 QKKRLAK-RKSAEADYAKLLAQRKKESKVRRQEE 607
++++A+ ++ E + ++L +RK+ K+ ++EE
Sbjct: 683 DREKMAREQRLREEEEKRILEERKRREKLDKEEE 716
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,790
Number of Sequences: 5004
Number of extensions: 49580
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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