Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K04
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 238 2e-63
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 237 6e-63
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 31 0.62
02_01_0295 - 1973115-1973404,1974138-1974663 31 0.62
11_04_0329 - 16442298-16443734 29 2.5
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 29 3.3
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 28 5.8
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 28 5.8
05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691 28 5.8
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 238 bits (583), Expect = 2e-63
Identities = 125/204 (61%), Positives = 151/204 (74%), Gaps = 4/204 (1%)
Frame = +2
Query: 11 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGER 184
EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT RVRLL+ +G C+R RRDGER
Sbjct: 35 EVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGER 94
Query: 185 KRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDD 364
+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DD
Sbjct: 95 RRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDD 154
Query: 365 VRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRTSIALSPSQKKRLAKRKS 538
VR+YV +R K GK+ + KAPKIQRLVTP+ LQR+ A +KKR+AK+KS
Sbjct: 155 VRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKR--ARIADKKKRIAKKKS 208
Query: 539 AEADYAKLLAQRKKESKVRRQEEI 610
A+Y KLLAQR KE + RR E +
Sbjct: 209 EAAEYQKLLAQRLKEQRERRSESL 232
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 237 bits (580), Expect = 6e-63
Identities = 124/204 (60%), Positives = 152/204 (74%), Gaps = 4/204 (1%)
Frame = +2
Query: 11 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGER 184
EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT+ RVRLL+ +G C+R RRDGER
Sbjct: 35 EVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGER 94
Query: 185 KRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDD 364
+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DD
Sbjct: 95 RRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDD 154
Query: 365 VRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRTSIALSPSQKKRLAKRKS 538
VR+YV +R K GK+ + KAPKIQRLVTP+ LQR+ A +K+R+AK+KS
Sbjct: 155 VRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKR--ARIAQKKQRIAKKKS 208
Query: 539 AEADYAKLLAQRKKESKVRRQEEI 610
A+Y KLLAQR KE + RR E +
Sbjct: 209 EAAEYQKLLAQRLKEQRERRSESL 232
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 31.5 bits (68), Expect = 0.62
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +2
Query: 362 DVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRTSIALSPSQKKRLAKRKSA 541
DVRR+ R + E+ R RL P +RRT+ L PS K+R + + A
Sbjct: 12 DVRRFAAARAGELRSLHESVSARLAG----RLTQPRSARRRTTGHL-PSNKRRRRRSRDA 66
Query: 542 EADYAKLLAQRKKESKVRRQEEI 610
EA + + +VRR+ E+
Sbjct: 67 EAADGTEEEEGRPSRRVRRRREL 89
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 31.5 bits (68), Expect = 0.62
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +2
Query: 146 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKR 319
G S + + G ++ RG + + S AL + GA PG ++P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 320 ASKIRKLFNLKKEDDVRRYVVKRLLPAKEG 409
+KIRKL +K ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>11_04_0329 - 16442298-16443734
Length = 478
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -3
Query: 333 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 163
R+L A G + + CAP M LAS+ P + LRF S RRG
Sbjct: 56 RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 311 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 180
D+D ++ + F + GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +2
Query: 302 RLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLV 460
++ PK+A ++ + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 28.3 bits (60), Expect = 5.8
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Frame = +2
Query: 296 PRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKE-----GKENAKPRYKAPK--IQR 454
PR P+R S ++ + ++ VRR R P + ++ K + ++PK R
Sbjct: 252 PRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQVRSPKQAQSR 311
Query: 455 LVTPVVLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRR 598
+P ++R S + SP K+ + E A +RK S+ R
Sbjct: 312 SRSPSPARKRESRSPSPRSKRLRRAQSEREGADATEGDRRKTTSREER 359
>05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691
Length = 404
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 278 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPA 400
+ D E P+ + + + K+ L ED +VVKRLL A
Sbjct: 165 MDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRA 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,026
Number of Sequences: 37544
Number of extensions: 366246
Number of successful extensions: 976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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