Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K04
(665 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY656663-1|AAT68000.1| 148|Apis mellifera pteropsin protein. 24 1.5
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 23 2.6
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 23 2.6
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 23 2.6
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 23 2.6
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 23 2.6
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 23 2.6
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 23 2.6
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 23 2.6
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 23 2.6
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 2.6
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 2.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 2.6
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 4.6
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 22 6.0
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 21 8.0
>AY656663-1|AAT68000.1| 148|Apis mellifera pteropsin protein.
Length = 148
Score = 23.8 bits (49), Expect = 1.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 436 GA*NPEASNTGCSAAQNVH 492
G+ PEA N CS + VH
Sbjct: 38 GSYGPEAGNVSCSVSWEVH 56
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 23.0 bits (47), Expect = 2.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 275 GLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 388
G +G P P+ A +L LK+E RY+ +R
Sbjct: 11 GRGNGGTPEEKRPRTAFSGEQLARLKREFAENRYLTER 48
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
+L+ RTS ++R E +Y K K+ S+ RR+ E
Sbjct: 29 LLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRRERE 74
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
+L+ RTS ++R E +Y K K+ S+ RR+ E
Sbjct: 29 LLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRRERE 74
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
+L+ RTS ++R E +Y K K+ S+ RR+ E
Sbjct: 29 LLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRRERE 74
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
+L+ RTS ++R E +Y K K+ S+ RR+ E
Sbjct: 29 LLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRRERE 74
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
+L+ RTS ++R E +Y K K+ S+ RR+ E
Sbjct: 29 LLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRRERE 74
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
+L+ RTS ++R E +Y K K+ S+ RR+ E
Sbjct: 29 LLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRRERE 74
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
+L+ RTS ++R E +Y K K+ S+ RR+ E
Sbjct: 29 LLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRRERE 74
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
+L+ RTS ++R E +Y K K+ S+ RR+ E
Sbjct: 29 LLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRRERE 74
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
+L+ RTS ++R E +Y K K+ S+ RR+ E
Sbjct: 251 LLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRRERE 296
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.0 bits (47), Expect = 2.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 153 EWPFDIKRRTRLLVRTPCFI 94
EWP +++R L + CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.0 bits (47), Expect = 2.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 153 EWPFDIKRRTRLLVRTPCFI 94
EWP +++R L + CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 4.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 473 LQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 607
L+ RTS ++R K E +Y K K+ + RR+ E
Sbjct: 263 LEERTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRDRRERE 307
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.8 bits (44), Expect = 6.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 470 VLQRRTSIALSPSQKKRLAKRKSAEADYAKLLAQRKKESKVRRQ 601
+L+ RTS ++R K E Y K K+ S+ RR+
Sbjct: 262 LLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRRE 305
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 296 PRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 388
P P+ A +L LK+E RY+ +R
Sbjct: 18 PEEKRPRTAFSAEQLARLKREFAENRYLTER 48
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,235
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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