Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K03
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 30 0.22
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 30 0.22
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 27 1.1
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 2.7
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 26 2.7
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 25 4.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 8.1
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 25 8.1
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.1
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 25 8.1
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 29.9 bits (64), Expect = 0.22
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +3
Query: 18 NITFGMVPIRDPEMISITASPE-APPPRI-RILDARQRE--VETVRIGDRL 158
+I FG RD + IS+ PE APP ++ R +D + V+TV+ GDR+
Sbjct: 190 SIEFGFSTFRDHQSISLQEMPERAPPGQLPRSIDILLDDDLVDTVKPGDRV 240
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 29.9 bits (64), Expect = 0.22
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +3
Query: 147 GDRLTFRIEIPEDTPYGIFARSCVAMAKDSKSTFQII------DDEGCPVDPSIFPAFTP 308
GD + R+ +P+ +P+ A + A+ KDS ST + D+E P+D + FT
Sbjct: 718 GDASSNRMAVPDKSPFVHAAPNSKALTKDSFSTHISVSSLLHSDNEISPIDSTRKDYFTS 777
Query: 309 DGNALQSVYE 338
+ LQ++ E
Sbjct: 778 KDSNLQTLKE 787
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 217 TQLRAKMPYGVSSGISIRKVSLSPMR 140
T LR K PY + SG++ VS P++
Sbjct: 538 TMLRIKDPYRIPSGLNFEIVSFEPLK 563
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 2.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 280 STGHPSSSMIWKVLLESLAIATQLRAKMPYGVSSGISIRKVSLSPMRTVSTS 125
S+ +SS SL +T L + P VSS SI +S + +VSTS
Sbjct: 113 SSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTS 164
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 260 VDDLESALRIFSHSDTTASE--DAIRSVFGNLDTESKPVSDAYCFDLSL 120
V ++ + L++F D A + + GN+ + PV+D + FDL+L
Sbjct: 122 VKNVYTTLQLFPRQDLLAYSLNQIVEILLGNVMSSVLPVADRFQFDLTL 170
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 339 AFRFTESYGVIFQCNVKYCLGP 404
A + GV+ +CNV+Y L P
Sbjct: 345 AIKIIRHLGVVGECNVQYALSP 366
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 24.6 bits (51), Expect = 8.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 363 GVIFQCNVKYCLGPREPAVC 422
GV+ +CN++Y L P C
Sbjct: 739 GVVGECNIQYALNPFTKEYC 758
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 24.6 bits (51), Expect = 8.1
Identities = 6/14 (42%), Positives = 12/14 (85%)
Frame = +3
Query: 414 AVCEWGKDSLESWG 455
++C+WG+D + +WG
Sbjct: 189 SLCQWGEDFVWNWG 202
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 229 LAIATQLRAKMPYGVSSGISIRKVSLSP 146
L ++ +LR K+P VSS I+K + +P
Sbjct: 731 LVLSRKLRGKIPENVSSSELIKKCASNP 758
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 230 FSHSDTTASEDAIRSVFGNLDTESKPVS 147
F++S +T EDA+ S + SKP S
Sbjct: 148 FTNSQSTEKEDAMYSKDNGFEDRSKPAS 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,333
Number of Sequences: 5004
Number of extensions: 43452
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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