Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K03
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0399 + 3036716-3037576 31 0.66
11_06_0016 - 19284810-19284926,19285527-19286879 29 2.0
09_01_0080 - 1168032-1168046,1168374-1168431,1168516-1168631,116... 29 2.0
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020... 29 2.0
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55... 29 2.6
11_02_0043 - 7690506-7691726 28 4.6
06_01_0725 + 5305839-5306279,5306816-5307028,5307229-5307675,530... 28 4.6
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475... 28 4.6
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 27 6.1
09_04_0159 + 15213752-15214028,15214158-15214399 27 6.1
09_03_0196 + 13374054-13374456,13375145-13375707,13375935-133759... 27 6.1
06_01_1089 - 8935945-8936043,8936722-8936949,8937033-8937086,894... 27 6.1
01_06_0937 + 33175966-33178020 27 6.1
10_08_0036 + 14325793-14326457,14326610-14328035 27 8.1
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 8.1
10_06_0141 - 11151344-11151531,11151926-11152275,11153119-111532... 27 8.1
10_01_0040 - 467947-468480 27 8.1
>01_01_0399 + 3036716-3037576
Length = 286
Score = 30.7 bits (66), Expect = 0.66
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -2
Query: 422 AHRRLTRTETVLDITLEYDSIRLSEPKRFVHGLKCVTVWRKGWEDRWIHGTSFVVDDLES 243
AHR +TR T+ + IR E F HG + W++ WE H +FV ++
Sbjct: 156 AHREITRLITLHGVAAHL-LIRCLELHDFPHGDEAA--WQRWWE----HHDAFVPRAHDA 208
Query: 242 ALRIFS-HSDTTASEDAIR 189
LR+ S S + A+ED +R
Sbjct: 209 LLRLSSATSASAAAEDFLR 227
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = -2
Query: 335 VHGLKCVTVWRKGWEDRWIHGTSFVVDDLESALRIFSHSDTTASEDA 195
V L + +W W DRWI VV L A ++ EDA
Sbjct: 408 VRKLPMMVLWSGSWTDRWIDEGKKVVAALPDAKFVYHSGGRWPQEDA 454
>09_01_0080 -
1168032-1168046,1168374-1168431,1168516-1168631,
1169310-1169368,1169832-1169880,1170314-1170378,
1170477-1170564,1171212-1171277
Length = 171
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +3
Query: 75 SPEAPPP---RIRILDARQREVETVRIGDRLTFRIEIPEDTPYGIFARSCVAMAKDSKST 245
SP APPP R+ + +GD +T R + TP + + + S
Sbjct: 4 SPSAPPPLRLRLALASTAPHNNGVYTVGDFMTKRPNLHVVTPATSVDEALETLVQHKISG 63
Query: 246 FQIIDDEG 269
F ++DD G
Sbjct: 64 FPVVDDTG 71
>01_06_1805 -
39999987-40000169,40000648-40000974,40001724-40002017,
40002112-40002231,40002714-40002776,40003150-40003310,
40003864-40004035
Length = 439
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 161 FPYRDSRRHSVWHLRSQLCRYG*RF*EHFPN-HRRRRMSRGSIYLPSLYA 307
+P R S + ++L++ C+YG H P SRGS PS+++
Sbjct: 168 YPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHS 217
>06_01_0065 +
549972-550770,551577-552190,552392-552544,552769-552885,
552972-553076,553269-553334,553430-553494,553577-553778,
554026-554169,554212-554340
Length = 797
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 308 WRKGWEDRWIHGTSFVVDDLESALRIFSHS 219
WR+ W+ I G S +DD E A ++ S
Sbjct: 451 WRQPWDANEIEGLSITMDDFEEATKMVQPS 480
>11_02_0043 - 7690506-7691726
Length = 406
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -2
Query: 251 LESALRIFSHSDTTASEDAIRSVFGNLDTESKPVSDAY 138
L+ A+++ ++T+A+ A RS FG + ES V DA+
Sbjct: 222 LDLAIQLLPDNNTSATSAAARSAFGIVLRESFKVYDAF 259
>06_01_0725 +
5305839-5306279,5306816-5307028,5307229-5307675,
5307768-5307917,5308185-5308486,5309718-5309758,
5311294-5311968,5312343-5312386
Length = 770
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 126 EVETVRIGDRLTFRIEIPEDTPYGIFARSCVAMAKDSKSTFQIID 260
EV T+ ++ R ++ G ARSC+A K+ FQI+D
Sbjct: 471 EVLTIDTATKIGVRSAQHIESAGGYVARSCLASIVSPKTKFQIVD 515
>03_06_0372 +
33446153-33446665,33446744-33446993,33447347-33447501,
33447593-33447805,33447926-33448113,33448282-33448540
Length = 525
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 183 LRESRYGK*ACLRCVLFRPLFDGHRECVCVEEVP 82
L E R CL+C FDGH C + + P
Sbjct: 133 LSEGRVDGKGCLQCAYHGWCFDGHGSCQFIPQAP 166
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = -2
Query: 311 VWRKGWEDRWIHGTSFVVDDLESALRIFSHSD------TTASEDAIRSVFGN 174
+WR G+E + + G F DD+ AL+ + S ++ S +A R +FGN
Sbjct: 381 IWRTGFESKELQGVVF--DDVPEALKHWHASGMKVYIYSSGSREAQRLLFGN 430
>09_04_0159 + 15213752-15214028,15214158-15214399
Length = 172
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 239 EHFPNHRRRRMSRGSIY 289
E+FP+H +R M RG+I+
Sbjct: 69 ENFPHHHQREMQRGNIF 85
>09_03_0196 +
13374054-13374456,13375145-13375707,13375935-13375976,
13376059-13376087,13376309-13376534,13376970-13377008,
13377126-13377155
Length = 443
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 301 KAGKIDGSTGHPSSSMIWKVLLE 233
KAGK+D GH +S M+ V+L+
Sbjct: 318 KAGKVDPEVGHRTSKMLLLVVLD 340
>06_01_1089 -
8935945-8936043,8936722-8936949,8937033-8937086,
8940200-8940276,8940453-8940554,8941138-8941261
Length = 227
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 353 SEPKRFVHGLKCVTVWRKGWEDRWIHGTSFVVDD 252
S R H L CV + WE WI G V+DD
Sbjct: 125 SSTARHSHHLVCVWSRCRMWEMPWISGKDEVLDD 158
>01_06_0937 + 33175966-33178020
Length = 684
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 51 PEMISITASPEAPPPRIRILDARQREVETVRIGDRLTFRIEIPE 182
PE S +SP R+R L AR E R+ DR T R E P+
Sbjct: 35 PEAPS-ASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPD 77
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 260 VDDLESALRIFSH-SDTTASEDAIRSVFGNLDTESKPVSDAYCFDLSLTGIE 108
+ + A++ H D T++ D I+ GNLD E++ + + + ++ G+E
Sbjct: 430 IAQVNKAIKDARHIGDRTSNIDVIKVQAGNLDEEAQRIQELVPSNFNIIGVE 481
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 312 GNALQSVYEAFRFTESYGVIFQCNVKYCLGPREPAVCEWGKDSLESWG 455
G +L+++ AFR+ E Y + ++ G + P +D ++WG
Sbjct: 245 GGSLEALDNAFRWAEKYNLGVIVDLHAAPGSQNPWEHSGSRDGSQTWG 292
>10_06_0141 -
11151344-11151531,11151926-11152275,11153119-11153274,
11153505-11153674,11155431-11155589,11157139-11157447,
11157550-11157750
Length = 510
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +3
Query: 312 GNALQSVYEAFRFTESYGVIFQCNVKYCLGPREPAVCEWGKDSLESWGRKKRSFA 476
G +LQ++ AF++ E Y + ++ G + P +D + WG + A
Sbjct: 266 GGSLQALDNAFKWAEKYNLGVIVDLHAAPGSQNPFEHSASRDGSQDWGTTDANIA 320
>10_01_0040 - 467947-468480
Length = 177
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 168 IEIPEDTPYGIFARSCVAMAKDSKSTFQIIDDEGCPVD 281
I + ED P GI V +S F ++DD C +D
Sbjct: 97 ILLDEDLPSGIHTEKRVPANDNSARGFDVVDDIKCELD 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,327
Number of Sequences: 37544
Number of extensions: 290961
Number of successful extensions: 1079
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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