Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K03
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB033065-1|BAA86553.2| 1164|Homo sapiens KIAA1239 protein protein.     30   4.9  
AY168346-1|AAN86964.1| 2480|Homo sapiens retinitis pigmentosa 1-...    29   8.6  
AY168345-1|AAN86963.1| 2464|Homo sapiens retinitis pigmentosa 1-...    29   8.6  
AY168344-1|AAN86962.1| 2448|Homo sapiens retinitis pigmentosa 1-...    29   8.6  
AY168343-1|AAN86961.1| 2432|Homo sapiens retinitis pigmentosa 1-...    29   8.6  
AY168342-1|AAN86960.1| 2416|Homo sapiens retinitis pigmentosa 1-...    29   8.6  
AY168341-1|AAN86959.1| 2400|Homo sapiens retinitis pigmentosa 1-...    29   8.6  
AJ491324-1|CAD36957.1| 2464|Homo sapiens retinitis pigmentosa 1-...    29   8.6  

>AB033065-1|BAA86553.2| 1164|Homo sapiens KIAA1239 protein protein.
          Length = 1164

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = -2

Query: 299  GWEDRWIHGTSFVVDDLESALRIFSHSDTTASEDAIRSVFGNLDTESKPVSDAYCFDLSL 120
            G++D  I G   VVD +++AL+I       A+ ++ R +F N    S+P  ++YCF +S+
Sbjct: 1056 GFDDGSI-GIYTVVDRVDAALKI-----KIATSNS-RQIFNNATHTSRPKCNSYCFKISV 1108


>AY168346-1|AAN86964.1| 2480|Homo sapiens retinitis pigmentosa
           1-like 1 protein protein.
          Length = 2480

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 486 LVVRQKNASFGPTTRVNLYPTRTPPAHEDR 397
           L  R KN S+GP T+ ++  +R+PP    R
Sbjct: 244 LTSRNKNGSWGPKTKPSVIHSRSPPGSTPR 273


>AY168345-1|AAN86963.1| 2464|Homo sapiens retinitis pigmentosa
           1-like 1 protein protein.
          Length = 2464

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 486 LVVRQKNASFGPTTRVNLYPTRTPPAHEDR 397
           L  R KN S+GP T+ ++  +R+PP    R
Sbjct: 244 LTSRNKNGSWGPKTKPSVIHSRSPPGSTPR 273


>AY168344-1|AAN86962.1| 2448|Homo sapiens retinitis pigmentosa
           1-like 1 protein protein.
          Length = 2448

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 486 LVVRQKNASFGPTTRVNLYPTRTPPAHEDR 397
           L  R KN S+GP T+ ++  +R+PP    R
Sbjct: 244 LTSRNKNGSWGPKTKPSVIHSRSPPGSTPR 273


>AY168343-1|AAN86961.1| 2432|Homo sapiens retinitis pigmentosa
           1-like 1 protein protein.
          Length = 2432

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 486 LVVRQKNASFGPTTRVNLYPTRTPPAHEDR 397
           L  R KN S+GP T+ ++  +R+PP    R
Sbjct: 244 LTSRNKNGSWGPKTKPSVIHSRSPPGSTPR 273


>AY168342-1|AAN86960.1| 2416|Homo sapiens retinitis pigmentosa
           1-like 1 protein protein.
          Length = 2416

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 486 LVVRQKNASFGPTTRVNLYPTRTPPAHEDR 397
           L  R KN S+GP T+ ++  +R+PP    R
Sbjct: 244 LTSRNKNGSWGPKTKPSVIHSRSPPGSTPR 273


>AY168341-1|AAN86959.1| 2400|Homo sapiens retinitis pigmentosa
           1-like 1 protein protein.
          Length = 2400

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 486 LVVRQKNASFGPTTRVNLYPTRTPPAHEDR 397
           L  R KN S+GP T+ ++  +R+PP    R
Sbjct: 244 LTSRNKNGSWGPKTKPSVIHSRSPPGSTPR 273


>AJ491324-1|CAD36957.1| 2464|Homo sapiens retinitis pigmentosa
           1-like protein 1 protein.
          Length = 2464

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 486 LVVRQKNASFGPTTRVNLYPTRTPPAHEDR 397
           L  R KN S+GP T+ ++  +R+PP    R
Sbjct: 244 LTSRNKNGSWGPKTKPSVIHSRSPPGSTPR 273


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,068,516
Number of Sequences: 237096
Number of extensions: 1557699
Number of successful extensions: 4350
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4350
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)