Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K02
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 324 4e-89
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 324 4e-89
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 324 4e-89
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 78 5e-15
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 55 3e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 55 3e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 55 3e-08
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 54 1e-07
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 54 1e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 53 2e-07
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 52 2e-07
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 50 2e-06
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 50 2e-06
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.028
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.028
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.60
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 0.80
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 0.80
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 1.1
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 1.1
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 1.4
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 1.4
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 1.8
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical p... 28 4.2
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 28 4.2
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 28 4.2
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 7.4
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 7.4
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 9.8
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 9.8
U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical pr... 27 9.8
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 27 9.8
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 27 9.8
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 27 9.8
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 27 9.8
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 27 9.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 324 bits (795), Expect = 4e-89
Identities = 149/192 (77%), Positives = 166/192 (86%)
Frame = +1
Query: 10 EIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCL 189
EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L
Sbjct: 135 EITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTL 194
Query: 190 IEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTE 369
+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTE
Sbjct: 195 LEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTE 254
Query: 370 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 549
VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++N
Sbjct: 255 VKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMN 314
Query: 550 HPGQISNGYTPV 585
HPGQISNGYTPV
Sbjct: 315 HPGQISNGYTPV 326
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 324 bits (795), Expect = 4e-89
Identities = 149/192 (77%), Positives = 166/192 (86%)
Frame = +1
Query: 10 EIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCL 189
EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTL 228
Query: 190 IEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTE 369
+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTE
Sbjct: 229 LEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTE 288
Query: 370 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 549
VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++N
Sbjct: 289 VKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMN 348
Query: 550 HPGQISNGYTPV 585
HPGQISNGYTPV
Sbjct: 349 HPGQISNGYTPV 360
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 324 bits (795), Expect = 4e-89
Identities = 149/192 (77%), Positives = 166/192 (86%)
Frame = +1
Query: 10 EIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCL 189
EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTL 228
Query: 190 IEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTE 369
+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTE
Sbjct: 229 LEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTE 288
Query: 370 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 549
VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++N
Sbjct: 289 VKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMN 348
Query: 550 HPGQISNGYTPV 585
HPGQISNGYTPV
Sbjct: 349 HPGQISNGYTPV 360
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 77.8 bits (183), Expect = 5e-15
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 2/194 (1%)
Frame = +1
Query: 10 EIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKC 186
EI+ +++ +++K+G+NP + +VP SG G + + T W G C
Sbjct: 271 EIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEG--NWY--------SGPC 320
Query: 187 LIEALDAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANIT 363
IE +D +LP R + +R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 321 FIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPNKQP 378
Query: 364 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 543
+V + + V GDN+ F +K + EL+ G++ + G F A+V+V
Sbjct: 379 VQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAEVLV 437
Query: 544 LNHPGQISNGYTPV 585
L H I++GY+ V
Sbjct: 438 LEHRSIIASGYSCV 451
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 55.2 bits (127), Expect = 3e-08
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 166 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 339
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 285
Query: 340 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 480
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 286 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 55.2 bits (127), Expect = 3e-08
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 166 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 339
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 340 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 480
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 55.2 bits (127), Expect = 3e-08
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 166 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 339
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 340 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 480
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 53.6 bits (123), Expect = 1e-07
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 11 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 187
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 188 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 286
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Frame = +1
Query: 253 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 420
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCG 436
Query: 421 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGY 576
+ F +K + K++R+G V D K P F A+++VL+HP I Y
Sbjct: 437 QSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNY 487
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Frame = +1
Query: 10 EIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKC 186
EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ +G C
Sbjct: 330 EIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY------------DGPC 374
Query: 187 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFAPANIT 363
L+E +D+ + P P+D LR+ + DV K+ V G++E+G + K V + +
Sbjct: 375 LLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAA 434
Query: 364 T 366
T
Sbjct: 435 T 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Frame = +1
Query: 10 EIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKC 186
EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ +G C
Sbjct: 348 EIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY------------DGPC 392
Query: 187 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFAPANIT 363
L+E +D+ + P P+D LR+ + DV K+ V G++E+G + K V + +
Sbjct: 393 LLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAA 452
Query: 364 T 366
T
Sbjct: 453 T 453
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Frame = +1
Query: 253 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 420
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCG 437
Query: 421 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGY 576
+ F +K + K++R+G V D K P F A+++VL+HP I Y
Sbjct: 438 QSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNY 488
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 187 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANI 360
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 361 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 486
T +++ ++++E GD+ G + V ++RG AG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 187 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANI 360
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 361 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 486
T +++ ++++E GD+ G + V ++RG AG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 38.3 bits (85), Expect = 0.004
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +1
Query: 253 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITT----EVKSVEMHHEALQEAVPG 420
++++Y + +G V G + G L G V+ P T V S+ +A+ PG
Sbjct: 407 IEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPG 466
Query: 421 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 552
+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 467 EAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.5 bits (78), Expect = 0.028
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 208 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 387
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 388 HHEALQEAVPGDNVGFNV 441
+ + + G F V
Sbjct: 251 WKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.5 bits (78), Expect = 0.028
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 208 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 387
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 388 HHEALQEAVPGDNVGFNV 441
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.60
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = -2
Query: 545 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPG-TASCRASWCISTDLT 369
ST T A+ + P ++ P + T +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 368 SVVMLAGAKTTTVPGFR--IPVSTLPTGTVPIPPILY 264
V + +TVP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 416 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 267
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 416 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 267
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -2
Query: 536 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 357
T A +AAP GGLF + T P T T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 356 LAGAKTTTVPGFRIPVSTLPT 294
+ T+T+P P PT
Sbjct: 528 TTTSTTSTLPK---PAEATPT 545
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -2
Query: 545 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS--WCISTDL 372
++ T S AP GGLF + T P + T T +P T +T
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTT 506
Query: 371 TSVVMLAGAKTTTVPGF-RIPVSTLPTGTVPIP 276
+ G +TV +P +T T T+P P
Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 27.5 bits (58), Expect = 7.4
Identities = 30/94 (31%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Frame = -2
Query: 554 G*FSTMTCAVKSAAPLGGLFFESPAT---*PRRNSL------TDTFLTLKPTLSPGTASC 402
G F + T A AAP GLF S T P SL T T + P S G
Sbjct: 387 GLFGSSTPAKTPAAPTAGLFGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGLFG 446
Query: 401 RASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTL 300
+S L GA TTT P P L
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGL 480
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 488 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 330
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163
Query: 329 PGFRIP 312
PG+ P
Sbjct: 164 PGYLPP 169
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 488 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 330
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 329 PGFRIP 312
PG+ P
Sbjct: 164 PGYLPP 169
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 488 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 330
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 329 PGFRIP 312
PG+ P
Sbjct: 164 PGYLPP 169
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 488 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 330
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 329 PGFRIP 312
PG+ P
Sbjct: 164 PGYLPP 169
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 322 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 447
KPGT+ F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 404 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 282
CR CI+T +T + + V PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical
protein F54B11.11 protein.
Length = 598
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = -2
Query: 440 TLKPTLSPGTASCRASWCISTDLTSV---VMLAGAKTTTVPGFRIPVSTLPTGTVPIPPI 270
T +P LS T+S + +T +T+ ++ A TTT P P +T T PP+
Sbjct: 471 TTQPILSTMTSSTTKTLTSTTTITTTKANILTTTATTTTPPVTSAPATTFITPVPFTPPV 530
Query: 269 -----LYTSCRGRRRALSVG 225
+Y+S G + ++G
Sbjct: 531 TNSTTIYSSNTGSTLSTTIG 550
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -2
Query: 404 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 225
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 224 RAG 216
+ G
Sbjct: 273 KEG 275
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -2
Query: 404 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 225
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 224 RAG 216
+ G
Sbjct: 273 KEG 275
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 5.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 318 PKAWYCCRFCP 350
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 110 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 247
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -1
Query: 288 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 139
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -2
Query: 464 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 285
++ T T T T +PGT + +T S GA TT PG V+ PT +
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 284 PIPPILYTSCRG 249
+ T+ +G
Sbjct: 2074 STTQPIITTTKG 2085
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 493 KNNPPRGAAD-FTAQVIVLNHP 555
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 493 KNNPPRGAAD-FTAQVIVLNHP 555
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -2
Query: 464 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 285
++ T T T T +PGT + +T S GA TT PG V+ PT +
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 284 PIPPILYTSCRG 249
+ T+ +G
Sbjct: 2074 STTQPIITTTKG 2085
>Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical
protein F45E6.2 protein.
Length = 589
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 343 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK--NNPPRGA 516
F P E+ S+ + QE+ + GF+ +N + R G GDS ++PP
Sbjct: 21 FPPQFDQLELDSLLYGTDESQESTSSSSFGFSDQNAGFRS-RDGGSLGDSSSDSSPPLSC 79
Query: 517 ADFT 528
A+FT
Sbjct: 80 ANFT 83
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 488 SPAT*PRRNSLTDTFLTLKPTLSPGTASCR-ASWCISTDLTSVVMLAGAKTTTVPGFRIP 312
+P+T S + TF + T + T++ + +S I++ +S + TTT P
Sbjct: 313 TPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPEITST 372
Query: 311 VSTLPTGTV 285
+S+LP +
Sbjct: 373 LSSLPDNAI 381
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 488 SPAT*PRRNSLTDTFLTLKPTLSPGTASCR-ASWCISTDLTSVVMLAGAKTTTVPGFRIP 312
+P+T S + TF + T + T++ + +S I++ +S + TTT P
Sbjct: 313 TPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPEITST 372
Query: 311 VSTLPTGTV 285
+S+LP +
Sbjct: 373 LSSLPDNAI 381
>U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical
protein F58F9.7 protein.
Length = 667
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 47 LVTIRLPSLSYPFLAGTEITCWSRPPKC-HGSRDGWLSVKKERLKVNALL 193
++ +R P ++ L G I P C G +GW+ K R ++ALL
Sbjct: 206 VIQVRCPR-TFQTLPGITIGDMGSKPGCWQGVENGWMEFKNHRAPLSALL 254
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 473 PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPT 294
P +++T + +T PT++P T++ S T A TTT P T T
Sbjct: 523 PHLSTITGSIVTSTPTMAPQTSA-------SPTTTPTHTTASQPTTTKPVVTTNSVTPST 575
Query: 293 GTVPIP 276
GT +P
Sbjct: 576 GTTTVP 581
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 376 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 495
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 376 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 495
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 27.1 bits (57), Expect = 9.8
Identities = 21/94 (22%), Positives = 40/94 (42%)
Frame = -2
Query: 308 STLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLNHG 129
+T+P T+ YTS + R+ + + +H S L+S++ LN+
Sbjct: 115 TTVPETTIHRRSEEYTSYQPRKSKEEILQVNSASRPALPRQHSASTVSPLQSSSDELNND 174
Query: 128 ILVDGSNMLSPCQPEMGTKATAAGL*PIFLM*EE 27
+D + SP E ++T + P ++ EE
Sbjct: 175 SGIDNRTVGSPSTSEFSPRSTDLFVSPKSIIDEE 208
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 455 TDTFLTLKPTLSPGTASCRASWCISTD 375
T FLTL+ T T C+ SWC D
Sbjct: 42 TSLFLTLQSTGPEMTNLCKKSWCDKVD 68
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -2
Query: 464 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 285
++ T T T T +PGT + +T S GA TT PG V+ PT +
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 284 PIPPILYTSCRG 249
+ T+ +G
Sbjct: 2074 STTQPIITTTKG 2085
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.136 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,017,634
Number of Sequences: 27780
Number of extensions: 340321
Number of successful extensions: 861
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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