Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K01
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   3.1  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   4.2  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   5.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.3  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    24   9.6  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    24   9.6  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    24   9.6  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   9.6  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 113 WISLLWRH*WSSAWTARSTARL 178
           W+++ W   W S W AR  A++
Sbjct: 271 WMAIWWEIIWLSIWAARYAAKV 292


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 405 G*NHKFVSHCLQTKIGDMHPIKLISELRETVGGC 304
           G  H  + HC Q+   +   I  +SE+  T GGC
Sbjct: 343 GYRHSDIHHCGQSLGCNCECIPELSEIESTSGGC 376


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 275 IRTPRHFATLHPPTVSLNSDIN 340
           + T  H  TL  PTVS N+DI+
Sbjct: 20  VNTQPHSETLSVPTVSSNNDID 41


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 140 WSSAWTARSTARLNTNKLED 199
           WS+ W++ ST     NKLE+
Sbjct: 380 WSTTWSSVSTFASEDNKLEE 399


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 248 PMLPVSALFIRTPRHFATLHPPTVSLNSDI-NFIGCISP 361
           P+LP+  +FIRT     ++   T S+  +I   IG I P
Sbjct: 481 PVLPLVCVFIRTSMQTWSMFRSTHSMKQEIAKSIGTIFP 519


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 15  LCCAHVFSVC 44
           LC AHVFS+C
Sbjct: 125 LCSAHVFSIC 134


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 142 PSMSPQKGYPASQPYTLNRN 83
           PS++P K YP S+ Y+ N+N
Sbjct: 452 PSLTPSKNYP-SKIYSPNKN 470


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 172 GSTPRCPSGTPSMSPQKGYPASQPY 98
           GSTP   S T  +SP +G+P +  Y
Sbjct: 295 GSTPA--SATVPISPARGFPTTSAY 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,590
Number of Sequences: 5004
Number of extensions: 35142
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)