Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K01
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034     28   4.1  
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004     27   9.5  
03_06_0013 - 31007580-31007657,31007795-31007876,31007963-310080...    27   9.5  

>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
          Length = 760

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 6   RIFLCCAHVFSVCGEFSWLLTAATVQFLFNVYGCEAGYPFCGDIDGVPLGQRGVLPGSTQ 185
           R FL   H    C     L+    V  +++ Y CE  Y FC  +D + +  + +L   T+
Sbjct: 250 RAFLISGHYGFSCTAMEGLVQGNCVYIVWSGYDCERIYKFC--LDDMTISLQPILAHPTE 307


>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
          Length = 591

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 251 MLPVSALFIRTPRHFATLHPPTVS 322
           +LP  A F  T +H A LHPP  S
Sbjct: 6   LLP-RATFAATTKHIAVLHPPVAS 28


>03_06_0013 -
           31007580-31007657,31007795-31007876,31007963-31008065,
           31008156-31008315,31009016-31009207,31009880-31010194
          Length = 309

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 323 LNSDINFIGCISPILVCKQCDTNLWFYPXNYCCFHSTFCTFVY 451
           L + I+  GC    LV       LW Y     C+HS +   +Y
Sbjct: 236 LLNGISLFGCF---LVATGAGFGLWLYNLTSVCYHSLYLPLLY 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,109,386
Number of Sequences: 37544
Number of extensions: 228902
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)