Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K01
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z50858-3|CAA90723.1|  131|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical
           protein R13H4.3 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 84  FLFNVYGCEAGYPFCGDIDGVPLGQRGVLPGSTQI 188
           FL+ +Y    GY +  DID  PL      PG   +
Sbjct: 108 FLYGLYPASGGYQWSSDIDWQPLPVHASTPGEPDL 142


>Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical
           protein K08C9.7 protein.
          Length = 154

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 24/90 (26%), Positives = 35/90 (38%)
 Frame = -3

Query: 355 YASNKIDIRIKGNCGWV*XCKMXWSAYKKRAHRQHGXXXXXXXXXXXXXXXRVL*FICVE 176
           YA+ K D  IK        C++   A KKR  + +                    F   E
Sbjct: 59  YAAGKGDCGIKAAATIYVNCELLGGA-KKRKKKVYIIPKKNNISQRKSSSPSPKYFKIDE 117

Query: 175 PGSTPRCPSGTPSMSPQKGYPASQPYTLNR 86
            G   R P+G P++S Q+    +QP TL +
Sbjct: 118 NGKISRLPTGIPTVSIQREAFMTQPTTLRK 147


>Z50858-3|CAA90723.1|  131|Caenorhabditis elegans Hypothetical
           protein F44A6.3 protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 169 STPRCPSGTPSMSPQKGYPASQPYTLNRN*TVAAVSSQE 53
           ST   PS TP    +K Y  S P T N N     ++S E
Sbjct: 84  STQLTPSPTPPEENRKNYNCSFPETTNNNTDAKYLNSSE 122


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 314  TVSLNSDINFIGCISPILVCKQCDTNLWFYPXNYCC 421
            T +  SD +   C  P  + + C T + ++P   CC
Sbjct: 1031 TRTCTSDADGCPCQGPTTITEPCGTGVCYFPRLSCC 1066


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,595,111
Number of Sequences: 27780
Number of extensions: 209064
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)