Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K01
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = +2

Query: 308 PPTVSLNSDINFIGCISPILVCKQCDTNL--WFYPXNYC 418
           PPT  L      + C+  +    +C T+   W Y  + C
Sbjct: 145 PPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRC 183


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +3

Query: 285 HXILQXYTHPQFPLIRI----SILLDAYHRF*F 371
           H +   +  P++P+IR+    S  +D Y R  F
Sbjct: 338 HLLQNTWLDPEYPMIRVHKTQSQTIDIYSRIGF 370


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 280 HSTXFCNXTPTHSFP*FGYQFYW 348
           HS+ FC   P    P F    +W
Sbjct: 219 HSSSFCIPLPVRVLPNFPSSGHW 241


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +2

Query: 383 DTNLWFYPXNYCCFH 427
           D N W YP   C ++
Sbjct: 292 DINQWVYPLTGCLYY 306


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 455 DNKQKYRMWNENNNNLXD 402
           DNK+     N+N NN  D
Sbjct: 512 DNKRNGNRQNDNQNNQND 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,632
Number of Sequences: 438
Number of extensions: 2617
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)