Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J24
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    29   0.71 
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   6.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   6.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   8.7  

>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 301 NKELKMIVEDDPSQTTSELATGFGVSDLTILIHLKQIGKGK 423
           +K  K  VEDDP  + ++      VSD  I+   K++ KGK
Sbjct: 23  SKRRKSSVEDDPDTSQTDGLVELPVSDTPIVKRNKELRKGK 63


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 444 LTEAHQHTCIEFCVTLHNLHNNEGISNRIIMTKNGY 551
           L +  +  CI++ + LHN+H  + IS  I    N Y
Sbjct: 170 LDQFAEQICIDYDIPLHNVHIVQNISKSIQAQINDY 205


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 485  YITQPSQ*RRNFQSYHYDEKWILTTIGK 568
            + T+PS+ R +  S H++E ++ + +GK
Sbjct: 1063 HTTEPSERRDSSTSSHFEEHFVFSLMGK 1090


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 96   ETQIRNKLNLNLQFPTIRLIF 34
            E+Q+R K+  NL  P I LIF
Sbjct: 1164 ESQLREKILANLVMPNITLIF 1184


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 331 DPSQTTSELATGFGVSDL 384
           +PS TTSEL+T F  SDL
Sbjct: 361 NPSLTTSELSTQFQDSDL 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,715
Number of Sequences: 5004
Number of extensions: 57115
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)