Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J24
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0344 + 22540436-22540737,22541304-22543545                       30   1.3  
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251...    29   2.2  
03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546...    29   2.9  
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    28   5.1  
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    27   8.9  

>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 460 WCASVNSWGNPAISLFQFVSSGLKLLNHSHRTLSLTLMWFGMDHLPQSSLIL 305
           W A +N   +  I + +    G+K+L   HR   L L   G+D LP+ ++++
Sbjct: 650 WIAGLNHLSSLHIRVCKLAPEGVKILGRLHRLECLEL---GLDFLPREAIVI 698


>07_01_0347 -
           2509229-2509487,2509682-2509922,2510292-2510511,
           2510943-2511278,2512047-2512103,2512187-2512210
          Length = 378

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 250 NFDLRNKPRERLVTLLVNKELKMIVEDDPSQTTSELATGFGVS 378
           NF   +KP +++     + ++ ++ EDDP+ T   +ATG GV+
Sbjct: 198 NFLCDSKPGDKVQITGPSGKIMLLPEDDPNATHIMIATGTGVA 240


>03_06_0206 -
           32353308-32353566,32353784-32354024,32354408-32354627,
           32354981-32355316,32355632-32355688,32355787-32355810
          Length = 378

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 250 NFDLRNKPRERLVTLLVNKELKMIVEDDPSQTTSELATGFGVS 378
           NF   +KP +++     + ++ ++ E+DP+ T   +ATG GV+
Sbjct: 198 NFLCNSKPGDKVKVTGPSGKIMLLPEEDPNATHIMIATGTGVA 240


>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 462 VGVLQLIHGVIQLFPFSNLFQVD*NC*ITHT 370
           VG L  +   +Q+FP+SN F  D NC I  T
Sbjct: 425 VGELYSLIRFLQIFPYSNYFCKDCNCEILDT 455


>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
            3384640-3384709,3385878-3386002,3387128-3387268,
            3387362-3387519,3387644-3387803,3390136-3390213,
            3390326-3390385,3390473-3390528,3391886-3392090,
            3394107-3394192,3394296-3394406,3394536-3394607,
            3395453-3395538,3395730-3395878,3396107-3396250,
            3396335-3396442,3396997-3397027,3397609-3397713,
            3398283-3398407,3398807-3398950,3399073-3399177,
            3400748-3400799,3401549-3401696,3401936-3402130,
            3402404-3402647,3403152-3403259,3403887-3404034,
            3405467-3405525,3405876-3405945,3407008-3407333,
            3407666-3409204,3410526-3410733,3410870-3410906,
            3411024-3411072,3411143-3411271
          Length = 2025

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 487  VTQNSMHVCWCASVNSWGNPAISLFQFVSSGLKLLNHS---HRTLSLTLMWFGMDHL 326
            + + S+++  C S +    P +  F+  S G+K + H+   H +    + W G  H+
Sbjct: 1918 ILETSLYMELCVSQSCGIRPVMGRFEDFSKGIKAMVHASEKHSSFKPLVRWNGSSHI 1974


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,512,453
Number of Sequences: 37544
Number of extensions: 332106
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)