Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J24
(614 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ341316-1|ABC72087.1| 344|Homo sapiens SETMAR protein. 66 7e-11
BC008931-1|AAH08931.2| 429|Homo sapiens SETMAR protein protein. 66 7e-11
AY952295-1|AAY29570.1| 671|Homo sapiens metnase protein. 66 7e-11
AK222734-1|BAD96454.1| 671|Homo sapiens SET domain and mariner ... 66 7e-11
AF054989-1|AAC09350.1| 671|Homo sapiens unknown protein. 66 7e-11
U52077-1|AAC52010.1| 343|Homo sapiens mariner transposase protein. 66 9e-11
U80776-1|AAC52012.1| 671|Homo sapiens unknown protein. 63 7e-10
X89405-1|CAA61584.2| 495|Homo sapiens CD5 protein protein. 31 4.3
X04391-1|CAA27979.1| 495|Homo sapiens protein ( Human mRNA for ... 31 4.3
EF064752-1|ABK41935.1| 495|Homo sapiens CD5 molecule protein. 31 4.3
BC027901-1|AAH27901.1| 495|Homo sapiens CD5 molecule protein. 31 4.3
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 29 9.9
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 9.9
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 9.9
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 9.9
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 9.9
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 9.9
>DQ341316-1|ABC72087.1| 344|Homo sapiens SETMAR protein.
Length = 344
Score = 66.5 bits (155), Expect = 7e-11
Identities = 35/99 (35%), Positives = 54/99 (54%)
Frame = +1
Query: 136 FMNTRSISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELK 315
F R + R N+ + T E V++WF++F G+ L ++ R + + N +L+
Sbjct: 19 FKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDNDQLR 78
Query: 316 MIVEDDPSQTTSELATGFGVSDLTILIHLKQIGKGK*LD 432
I+E DP TT E+A V+ T++ HLKQIGK K LD
Sbjct: 79 AIIEADPLTTTREVAEELNVNHSTVVRHLKQIGKVKKLD 117
>BC008931-1|AAH08931.2| 429|Homo sapiens SETMAR protein protein.
Length = 429
Score = 66.5 bits (155), Expect = 7e-11
Identities = 35/99 (35%), Positives = 54/99 (54%)
Frame = +1
Query: 136 FMNTRSISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELK 315
F R + R N+ + T E V++WF++F G+ L ++ R + + N +L+
Sbjct: 104 FKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDNDQLR 163
Query: 316 MIVEDDPSQTTSELATGFGVSDLTILIHLKQIGKGK*LD 432
I+E DP TT E+A V+ T++ HLKQIGK K LD
Sbjct: 164 AIIEADPLTTTREVAEELNVNHSTVVRHLKQIGKVKKLD 202
>AY952295-1|AAY29570.1| 671|Homo sapiens metnase protein.
Length = 671
Score = 66.5 bits (155), Expect = 7e-11
Identities = 35/99 (35%), Positives = 54/99 (54%)
Frame = +1
Query: 136 FMNTRSISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELK 315
F R + R N+ + T E V++WF++F G+ L ++ R + + N +L+
Sbjct: 346 FKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDNDQLR 405
Query: 316 MIVEDDPSQTTSELATGFGVSDLTILIHLKQIGKGK*LD 432
I+E DP TT E+A V+ T++ HLKQIGK K LD
Sbjct: 406 AIIEADPLTTTREVAEELNVNHSTVVRHLKQIGKVKKLD 444
>AK222734-1|BAD96454.1| 671|Homo sapiens SET domain and mariner
transposase fusion gene variant protein.
Length = 671
Score = 66.5 bits (155), Expect = 7e-11
Identities = 35/99 (35%), Positives = 54/99 (54%)
Frame = +1
Query: 136 FMNTRSISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELK 315
F R + R N+ + T E V++WF++F G+ L ++ R + + N +L+
Sbjct: 346 FKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDNDQLR 405
Query: 316 MIVEDDPSQTTSELATGFGVSDLTILIHLKQIGKGK*LD 432
I+E DP TT E+A V+ T++ HLKQIGK K LD
Sbjct: 406 AIIEADPLTTTREVAEELNVNHSTVVRHLKQIGKVKKLD 444
>AF054989-1|AAC09350.1| 671|Homo sapiens unknown protein.
Length = 671
Score = 66.5 bits (155), Expect = 7e-11
Identities = 35/99 (35%), Positives = 54/99 (54%)
Frame = +1
Query: 136 FMNTRSISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELK 315
F R + R N+ + T E V++WF++F G+ L ++ R + + N +L+
Sbjct: 346 FKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDNDQLR 405
Query: 316 MIVEDDPSQTTSELATGFGVSDLTILIHLKQIGKGK*LD 432
I+E DP TT E+A V+ T++ HLKQIGK K LD
Sbjct: 406 AIIEADPLTTTREVAEELNVNHSTVVRHLKQIGKVKKLD 444
>U52077-1|AAC52010.1| 343|Homo sapiens mariner transposase protein.
Length = 343
Score = 66.1 bits (154), Expect = 9e-11
Identities = 35/99 (35%), Positives = 53/99 (53%)
Frame = +1
Query: 136 FMNTRSISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELK 315
F R + R N+ + T E V++WF++F G+ L ++ R + + N +L+
Sbjct: 18 FKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDNDQLR 77
Query: 316 MIVEDDPSQTTSELATGFGVSDLTILIHLKQIGKGK*LD 432
I+E DP TT E+A V T++ HLKQIGK K LD
Sbjct: 78 AIIEADPLTTTREVAEELNVDHSTVVRHLKQIGKVKKLD 116
>U80776-1|AAC52012.1| 671|Homo sapiens unknown protein.
Length = 671
Score = 63.3 bits (147), Expect = 7e-10
Identities = 34/99 (34%), Positives = 53/99 (53%)
Frame = +1
Query: 136 FMNTRSISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELK 315
F R + R N+ + T E V++WF++F G+ L ++ R + + N +L+
Sbjct: 346 FKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDNDQLR 405
Query: 316 MIVEDDPSQTTSELATGFGVSDLTILIHLKQIGKGK*LD 432
I+E DP TT E+A V+ T++ HLKQI K K LD
Sbjct: 406 AIIEADPLTTTREVAEELNVNHSTVVRHLKQIEKVKKLD 444
>X89405-1|CAA61584.2| 495|Homo sapiens CD5 protein protein.
Length = 495
Score = 30.7 bits (66), Expect = 4.3
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = -2
Query: 442 SWGNPAISLFQFVSSGLKLLNHSHRTLSLTLMWFGMDHLPQSSLILY*QVGSPAVHGVCS 263
SWG + ++ S K+ + + L+L F + + PQSS+I Y Q+GS CS
Sbjct: 63 SWGRSS-KQWEDPSQASKVCQRLNCGVPLSLGPFLVTYTPQSSIICYGQLGS---FSNCS 118
Query: 262 VSRNFLNENVG 230
SRN + ++G
Sbjct: 119 HSRNDMCHSLG 129
>X04391-1|CAA27979.1| 495|Homo sapiens protein ( Human mRNA for
lymphocyte glycoprotein T1/Leu-1. ).
Length = 495
Score = 30.7 bits (66), Expect = 4.3
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = -2
Query: 442 SWGNPAISLFQFVSSGLKLLNHSHRTLSLTLMWFGMDHLPQSSLILY*QVGSPAVHGVCS 263
SWG + ++ S K+ + + L+L F + + PQSS+I Y Q+GS CS
Sbjct: 63 SWGRSS-KQWEDPSQASKVCQRLNCGVPLSLGPFLVTYTPQSSIICYGQLGS---FSNCS 118
Query: 262 VSRNFLNENVG 230
SRN + ++G
Sbjct: 119 HSRNDMCHSLG 129
>EF064752-1|ABK41935.1| 495|Homo sapiens CD5 molecule protein.
Length = 495
Score = 30.7 bits (66), Expect = 4.3
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = -2
Query: 442 SWGNPAISLFQFVSSGLKLLNHSHRTLSLTLMWFGMDHLPQSSLILY*QVGSPAVHGVCS 263
SWG + ++ S K+ + + L+L F + + PQSS+I Y Q+GS CS
Sbjct: 63 SWGRSS-KQWEDPSQASKVCQRLNCGVPLSLGPFLVTYTPQSSIICYGQLGS---FSNCS 118
Query: 262 VSRNFLNENVG 230
SRN + ++G
Sbjct: 119 HSRNDMCHSLG 129
>BC027901-1|AAH27901.1| 495|Homo sapiens CD5 molecule protein.
Length = 495
Score = 30.7 bits (66), Expect = 4.3
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = -2
Query: 442 SWGNPAISLFQFVSSGLKLLNHSHRTLSLTLMWFGMDHLPQSSLILY*QVGSPAVHGVCS 263
SWG + ++ S K+ + + L+L F + + PQSS+I Y Q+GS CS
Sbjct: 63 SWGRSS-KQWEDPSQASKVCQRLNCGVPLSLGPFLVTYTPQSSIICYGQLGS---FSNCS 118
Query: 262 VSRNFLNENVG 230
SRN + ++G
Sbjct: 119 HSRNDMCHSLG 129
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 29.5 bits (63), Expect = 9.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 396 PLETNWKREIAGLPHELTEAHQHTCIE 476
PL N + G+P EL ++QH C+E
Sbjct: 1830 PLVVNSPVYVGGIPQELLNSYQHLCLE 1856
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 9.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 396 PLETNWKREIAGLPHELTEAHQHTCIE 476
PL N + G+P EL ++QH C+E
Sbjct: 1830 PLVVNSPVYVGGIPQELLNSYQHLCLE 1856
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 9.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 396 PLETNWKREIAGLPHELTEAHQHTCIE 476
PL N + G+P EL ++QH C+E
Sbjct: 1830 PLVVNSPVYVGGIPQELLNSYQHLCLE 1856
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 9.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 396 PLETNWKREIAGLPHELTEAHQHTCIE 476
PL N + G+P EL ++QH C+E
Sbjct: 1830 PLVVNSPVYVGGIPQELLNSYQHLCLE 1856
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 9.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 396 PLETNWKREIAGLPHELTEAHQHTCIE 476
PL N + G+P EL ++QH C+E
Sbjct: 1830 PLVVNSPVYVGGIPQELLNSYQHLCLE 1856
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.5 bits (63), Expect = 9.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 396 PLETNWKREIAGLPHELTEAHQHTCIE 476
PL N + G+P EL ++QH C+E
Sbjct: 1830 PLVVNSPVYVGGIPQELLNSYQHLCLE 1856
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,021,746
Number of Sequences: 237096
Number of extensions: 2006592
Number of successful extensions: 2962
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2962
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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