Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J24
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 47 1e-05
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 36 0.030
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 35 0.040
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z81481-1|CAB03947.1| 404|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z83219-6|CAB05696.5| 351|Caenorhabditis elegans Hypothetical pr... 28 6.1
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 28 6.1
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 28 6.1
U21308-12|AAB93315.2| 360|Caenorhabditis elegans Hypothetical p... 28 6.1
AF025457-10|AAB70972.1| 148|Caenorhabditis elegans Hypothetical... 27 8.1
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/73 (27%), Positives = 41/73 (56%)
Frame = +1
Query: 199 TVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELKMIVEDDPSQTTSELATGFGVS 378
+V + +++WF++ N+DL +KPR L +++++ +EDDP + E++
Sbjct: 9 SVSYNTMKFWFEKIKKKNYDLDDKPRSGRPRLDIDEDISRALEDDPRSMSREISATLKRP 68
Query: 379 DLTILIHLKQIGK 417
TI+ HL + G+
Sbjct: 69 HTTIINHLHESGR 81
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 35.5 bits (78), Expect = 0.030
Identities = 22/88 (25%), Positives = 37/88 (42%)
Frame = +1
Query: 151 SISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELKMIVED 330
S A R + + + + WFQ+F G+F L R L ++L +VE+
Sbjct: 24 SAMEAERNICGAMGEGALSYNTAKSWFQKFKNGDFSLEEIERSGRPVELNEEDLVKLVEE 83
Query: 331 DPSQTTSELATGFGVSDLTILIHLKQIG 414
+P + E+ TI HL ++G
Sbjct: 84 EPRLSLREMEEKLECCHSTIARHLGRLG 111
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 35.1 bits (77), Expect = 0.040
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 226 WFQRFH*GNFDLRNKPRERLVTLLVNKELKMIVEDDPSQTTSELATGFGVSDLTILIHLK 405
WFQ+F G+F L R L ++L +VE++P + E+ TI HL
Sbjct: 24 WFQKFKNGDFSLEEIERSGRPVELNEEDLVKLVEEEPRLSLREMEEKLECCHSTIARHLG 83
Query: 406 QIG 414
++G
Sbjct: 84 RLG 86
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/88 (23%), Positives = 36/88 (40%)
Frame = +1
Query: 151 SISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVTLLVNKELKMIVED 330
S A R + + + + WFQ+ G+F L R L ++L +VE+
Sbjct: 24 SAMEAERNICGAMGEGALSYNTAKSWFQKLKNGDFSLEEIERSGRPVELNEEDLVKLVEE 83
Query: 331 DPSQTTSELATGFGVSDLTILIHLKQIG 414
+P + E+ TI HL ++G
Sbjct: 84 EPRLSLREMEEKLECCHSTIARHLGRLG 111
>Z81481-1|CAB03947.1| 404|Caenorhabditis elegans Hypothetical
protein C38D9.1 protein.
Length = 404
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 178 NDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRE 279
N + K KE YWF RF+ GN DL++ R+
Sbjct: 37 NTLKEKIAYKE--FEYWFHRFYNGNHDLQDDNRQ 68
>Z83219-6|CAB05696.5| 351|Caenorhabditis elegans Hypothetical
protein C31C9.4 protein.
Length = 351
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 154 ISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLR-NKPRERLVTLLVNKELKMIVE 327
I + ++ D + ++ WF RF+ GN DL + +E LL + L+MI E
Sbjct: 26 IEESFKKFCDAFGDELMEYREFELWFYRFYNGNLDLNYDMSQEPKTPLLQDMPLEMIEE 84
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 589 MFNHCETFSDCRQYPFFVIMIRLEIPS 509
+FN + F DC ++ FFV +RL IP+
Sbjct: 613 LFNTEQDFPDCDEFSFFV-SVRLNIPT 638
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 589 MFNHCETFSDCRQYPFFVIMIRLEIPS 509
+FN + F DC ++ FFV +RL IP+
Sbjct: 613 LFNTEQDFPDCDEFSFFV-SVRLNIPT 638
>U21308-12|AAB93315.2| 360|Caenorhabditis elegans Hypothetical
protein ZK1290.9 protein.
Length = 360
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 223 YWFQRFH*GNFDL 261
YWF RFH GN DL
Sbjct: 49 YWFYRFHNGNHDL 61
>AF025457-10|AAB70972.1| 148|Caenorhabditis elegans Hypothetical
protein C08E3.11 protein.
Length = 148
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 223 YWFQRFH*GNFDLRNKPRER 282
+WF RFH GN DL R R
Sbjct: 49 FWFYRFHNGNHDLHYDRRVR 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,980
Number of Sequences: 27780
Number of extensions: 314689
Number of successful extensions: 720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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