Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J24
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    57   1e-10
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.2  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
 Frame = +1

Query: 115 YFHIVLL-FMNTRSISAAARRTNDVYRKATVKESPVRYWFQRFH*GNFDLRNKPRERLVT 291
           Y HI+L  F   ++ S A ++   VY    +KE   + WF +F  G+F L+++ R     
Sbjct: 8   YRHILLFYFRKGKNASQAHKKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEKRSGRPV 67

Query: 292 LLVNKELKMIVEDDPSQTTSELATGFGVSDLTILIHLKQIGKGK*LD 432
            + +  +K I++ D   TT E+A    VS   I  HLKQ+G  + LD
Sbjct: 68  EVDDDLIKAIIDSDRHSTTREIAEKLHVSHTCIENHLKQLGYVQKLD 114



 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 432 LPHELTEAHQHTCIEFCVTLHNLHNNEGISNRII 533
           +PHEL E H    I  C  L   + N+    R+I
Sbjct: 117 VPHELKEKHLTQRINSCDLLKKRNENDPFLKRLI 150


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 364 GFGVSDLTILIHLKQIGKGK 423
           G G+  L +LIHL+ +G  K
Sbjct: 23  GLGILTLGVLIHLQILGVSK 42


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = -2

Query: 421  SLFQFVSSGLKLLNHSHRTLSLTLMWFGMDHLPQSSLILY*QVGSPAVHGVCSVSRNFLN 242
            +L+  V  G + LNH  RTL     +F    L Q     +   GS  V G    S+  + 
Sbjct: 1248 NLYTRVVDGREELNHGKRTLPAKNTYFEATDLQQHVEYQFWVTGSTRV-GEGQSSK--VA 1304

Query: 241  ENVGTNNVP 215
              V TN VP
Sbjct: 1305 AQVPTNRVP 1313


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = -2

Query: 421  SLFQFVSSGLKLLNHSHRTLSLTLMWFGMDHLPQSSLILY*QVGSPAVHGVCSVSRNFLN 242
            +L+  V  G + LNH  RTL     +F    L Q     +   GS  V G    S+  + 
Sbjct: 1244 NLYTRVVDGREELNHGKRTLPAKNTYFEATDLQQHVEYQFWVTGSTRV-GEGQSSK--VA 1300

Query: 241  ENVGTNNVP 215
              V TN VP
Sbjct: 1301 AQVPTNRVP 1309


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 22  HFDLKNQAYGWELQIQI*LVSYLCFKFSGSFYFHIVLLFMN 144
           H D  N  Y W+  I   +++ L  KF    +  ++ L++N
Sbjct: 623 HLDQWNWVYEWKELIPSHIMAGLLDKFFFPKWLQVLALWLN 663


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,270
Number of Sequences: 438
Number of extensions: 4076
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)