Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J22
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 133 6e-32
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 59 2e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 57 6e-09
04_04_0303 + 24269467-24270741 31 0.26
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 27 4.3
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668... 27 5.6
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345... 27 7.5
04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043 27 7.5
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 7.5
04_03_0116 - 11448012-11448525,11448693-11448763,11449139-114494... 26 9.9
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 133 bits (321), Expect = 6e-32
Identities = 58/78 (74%), Positives = 65/78 (83%)
Frame = +1
Query: 34 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 213
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66
Query: 214 QPTGGRARLTEGCSFRRK 267
QPTGG+ARLTEGCSFRRK
Sbjct: 67 QPTGGKARLTEGCSFRRK 84
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +1
Query: 34 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 171
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ++ F A
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 56.8 bits (131), Expect = 6e-09
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1
Query: 34 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 150
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ +
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45
>04_04_0303 + 24269467-24270741
Length = 424
Score = 31.5 bits (68), Expect = 0.26
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 31 AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 210
A+ LLHP L ++PH S +D CP Y+I ++ RVV C+++
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197
Query: 211 CQPTGGRA 234
C TG A
Sbjct: 198 CSATGAGA 205
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 13 AVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSH 168
AV L L+ + ASERRK K+ L N + + YK V SH
Sbjct: 51 AVPRSLEAKLMVKTLASERRKRKVNNLERKGNKVDVSIAANDYYKPRAVKSH 102
>03_02_0238 -
6687334-6687421,6687456-6687512,6688266-6688351,
6688410-6688589
Length = 136
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 139 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 231
CYKI+ ++SH Q ++ C IL +PTG R
Sbjct: 96 CYKISKIYSHGQSLL----CLDIL-RPTGRR 121
>08_01_0392 -
3454224-3454325,3454926-3455035,3455496-3455609,
3455930-3456043,3456474-3456531
Length = 165
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 103 PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 228
PN + C GC + ++ V CA CST+ P G
Sbjct: 18 PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 169 AQRVVVCAGCSTILCQPTGGRARLTEGCS 255
AQ +VC+GC +L P G + CS
Sbjct: 21 AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49
>04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043
Length = 436
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 251 HPSVNLARPPVGWQRIVEHPAHTTTLCAWLNT 156
HPS GW ++E AH + WL T
Sbjct: 318 HPSTAAFLSHCGWSSVLESMAHGVPVIGWLLT 349
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 16 VTMPLAIDLLHPSPASERRKHK 81
+T P DL + +PA++RR+HK
Sbjct: 98 LTQPFPADLPNNAPAAQRREHK 119
>04_03_0116 -
11448012-11448525,11448693-11448763,11449139-11449421,
11449520-11449672,11449750-11450219,11451470-11451631,
11451718-11451987,11452229-11452633
Length = 775
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 251 HPSVNLARPPVGWQRIVEHPAHTTTLCAW-LNTVVI 147
H S+ GW ++E AH + AW LN V+
Sbjct: 655 HASIGTFLSHYGWNSVLESTAHGVPVVAWPLNAQVL 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,223
Number of Sequences: 37544
Number of extensions: 242583
Number of successful extensions: 624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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