Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J20
(400 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC142648-1|AAI42649.1| 550|Homo sapiens NCOR1 protein protein. 29 7.5
BC068996-1|AAH68996.1| 522|Homo sapiens NCOR1 protein protein. 29 7.5
BC058511-1|AAH58511.1| 534|Homo sapiens NCOR1 protein protein. 29 7.5
BC056862-1|AAH56862.1| 518|Homo sapiens NCOR1 protein protein. 29 7.5
BC050594-1|AAH50594.1| 550|Homo sapiens NCOR1 protein protein. 29 7.5
BC026028-1|AAH26028.1| 541|Homo sapiens Unknown (protein for IM... 29 7.5
AF303586-1|AAO32942.1| 914|Homo sapiens NCOR isoform b protein. 29 7.5
AF087856-1|AAP97166.1| 2343|Homo sapiens nuclear receptor co-rep... 29 7.5
AF044209-1|AAC33550.1| 2440|Homo sapiens nuclear receptor co-rep... 29 7.5
AB028970-1|BAA82999.2| 2348|Homo sapiens KIAA1047 protein protein. 29 7.5
L76702-1|AAB69751.1| 602|Homo sapiens protein phosphatase 2A B5... 28 9.9
BC010692-1|AAH10692.1| 602|Homo sapiens protein phosphatase 2, ... 28 9.9
BC001095-1|AAH01095.1| 602|Homo sapiens protein phosphatase 2, ... 28 9.9
AL136304-1|CAI19791.1| 602|Homo sapiens protein phosphatase 2, ... 28 9.9
AB000634-1|BAA20381.1| 602|Homo sapiens protein phosphatase 2A ... 28 9.9
>BC142648-1|AAI42649.1| 550|Homo sapiens NCOR1 protein protein.
Length = 550
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 215 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 248
>BC068996-1|AAH68996.1| 522|Homo sapiens NCOR1 protein protein.
Length = 522
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 215 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 248
>BC058511-1|AAH58511.1| 534|Homo sapiens NCOR1 protein protein.
Length = 534
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 215 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 248
>BC056862-1|AAH56862.1| 518|Homo sapiens NCOR1 protein protein.
Length = 518
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 215 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 248
>BC050594-1|AAH50594.1| 550|Homo sapiens NCOR1 protein protein.
Length = 550
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 215 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 248
>BC026028-1|AAH26028.1| 541|Homo sapiens Unknown (protein for
IMAGE:3836580) protein.
Length = 541
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 215 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 248
>AF303586-1|AAO32942.1| 914|Homo sapiens NCOR isoform b protein.
Length = 914
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 106 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 139
>AF087856-1|AAP97166.1| 2343|Homo sapiens nuclear receptor
co-repressor protein.
Length = 2343
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 106 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 139
>AF044209-1|AAC33550.1| 2440|Homo sapiens nuclear receptor
co-repressor N-CoR protein.
Length = 2440
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 215 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 248
>AB028970-1|BAA82999.2| 2348|Homo sapiens KIAA1047 protein protein.
Length = 2348
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 138 KRARPEAPTQPPPQHDKHR-ISALIGDNMMMKRE 236
K PE P PPP KHR I +I D K E
Sbjct: 226 KPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAE 259
>L76702-1|AAB69751.1| 602|Homo sapiens protein phosphatase 2A
B56-delta protein.
Length = 602
Score = 28.3 bits (60), Expect = 9.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 99 PTDLSMAASEPWRKRARPEAPTQPPPQHDKHRISALIGDNMMMKRETEYSTEHYALNLKS 278
P A S+P RP T PP Q K + S G ++K+E S+ + L+
Sbjct: 42 PQPQPQAQSQPPSSNKRPSNSTPPPTQLSKIKYS---GGPQIVKKERRQSSSRFNLSKNR 98
Query: 279 E 281
E
Sbjct: 99 E 99
>BC010692-1|AAH10692.1| 602|Homo sapiens protein phosphatase 2,
regulatory subunit B', delta isoform protein.
Length = 602
Score = 28.3 bits (60), Expect = 9.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 99 PTDLSMAASEPWRKRARPEAPTQPPPQHDKHRISALIGDNMMMKRETEYSTEHYALNLKS 278
P A S+P RP T PP Q K + S G ++K+E S+ + L+
Sbjct: 42 PQPQPQAQSQPPSSNKRPSNSTPPPTQLSKIKYS---GGPQIVKKERRQSSSRFNLSKNR 98
Query: 279 E 281
E
Sbjct: 99 E 99
>BC001095-1|AAH01095.1| 602|Homo sapiens protein phosphatase 2,
regulatory subunit B', delta isoform protein.
Length = 602
Score = 28.3 bits (60), Expect = 9.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 99 PTDLSMAASEPWRKRARPEAPTQPPPQHDKHRISALIGDNMMMKRETEYSTEHYALNLKS 278
P A S+P RP T PP Q K + S G ++K+E S+ + L+
Sbjct: 42 PQPQPQAQSQPPSSNKRPSNSTPPPTQLSKIKYS---GGPQIVKKERRQSSSRFNLSKNR 98
Query: 279 E 281
E
Sbjct: 99 E 99
>AL136304-1|CAI19791.1| 602|Homo sapiens protein phosphatase 2,
regulatory subunit B (B56), delta isoform protein.
Length = 602
Score = 28.3 bits (60), Expect = 9.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 99 PTDLSMAASEPWRKRARPEAPTQPPPQHDKHRISALIGDNMMMKRETEYSTEHYALNLKS 278
P A S+P RP T PP Q K + S G ++K+E S+ + L+
Sbjct: 42 PQPQPQAQSQPPSSNKRPSNSTPPPTQLSKIKYS---GGPQIVKKERRQSSSRFNLSKNR 98
Query: 279 E 281
E
Sbjct: 99 E 99
>AB000634-1|BAA20381.1| 602|Homo sapiens protein phosphatase 2A
delta (B'') regulatory subunit, delta1 isoform protein.
Length = 602
Score = 28.3 bits (60), Expect = 9.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 99 PTDLSMAASEPWRKRARPEAPTQPPPQHDKHRISALIGDNMMMKRETEYSTEHYALNLKS 278
P A S+P RP T PP Q K + S G ++K+E S+ + L+
Sbjct: 42 PQPQPQAQSQPPSSNKRPSNSTPPPTQLSKIKYS---GGPQIVKKERRQSSSRFNLSKNR 98
Query: 279 E 281
E
Sbjct: 99 E 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,739,214
Number of Sequences: 237096
Number of extensions: 833804
Number of successful extensions: 2285
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2285
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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