Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J18
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.16
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 2.7
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 27 3.5
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 27 3.5
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 4.7
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 6.1
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 6.1
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 8.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.1
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 8.1
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.16
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = -2
Query: 651 ATFLSPLIASGTFLGAVIVSTPSDESLDSTVSGADPSGNAYFLTN*REM*PCSSFFSSCL 472
++F S L +S + S+P+ S + S + PS +++ T SS FSS +
Sbjct: 315 SSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSK--SSSSFSSTV 372
Query: 471 ASTTIYPSTVLTEISSGVKC*TSKLTWNLSLST 373
+S++ S+ LT SS S + + SLS+
Sbjct: 373 SSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSS 405
Score = 26.2 bits (55), Expect = 4.7
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = -2
Query: 639 SPLIASGTFLGAVIVSTPSDESLDSTVSGADPSGNAYFLT-N*REM*PCSSFFSSCLAST 463
SP S T + + S+ S S ST+S + S +++ T + M SSF SS +S+
Sbjct: 282 SPTSTSST-ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340
Query: 462 TIYPSTVLTEISSGVKC*TSKLTWNLSLSTLMLDPISLTAA 340
+ S+ + SS TS + S S+ + S +++
Sbjct: 341 STISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSS 381
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +2
Query: 335 LAAAVKDIGSSIKVDKDKFQVNLDVQHFTPEEISVKTVDGYIVVEAKHEEKKDEHGYISR 514
++ + IG + + + D+F N V +F P + + + K +E+ DEH
Sbjct: 1041 ISLTIPIIGETSRKELDQFLRNSKVNNFDPNAEAQRHLSYQARYRLKKQERLDEHKEEQE 1100
Query: 515 QFVRKYA--LPE 544
Q V + LPE
Sbjct: 1101 QLVTELLGYLPE 1112
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +2
Query: 299 LAREEYYRPWRHLAAAVKDIGSSIKVDKDKFQVNLDVQHFTPEEISVKTVDGYIVVEAKH 478
L+R +H+ ++ ++VDK+K ++L + +PE++ VK + + +A H
Sbjct: 51 LSRRRIRSVQKHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDV-VKCEERFNKSKAVH 109
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 275 ASPQVLARGRNAGRED-DEVDEDQLNR 198
A P +A+GR A R+D DE D D L R
Sbjct: 168 AGPIAIAQGRKAPRQDPDESDVDVLRR 194
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 476 HEEKKDEHGYISRQFVRKYALPEGSAPETVESKLSSDGVLT 598
+EEK++E I + V P GS + E++ SS G +T
Sbjct: 9 NEEKEEESEKIQKSPVDTPHTPNGSVSDNEENETSSTGEVT 49
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 299 LAREEYYRPWRHLAAAVKDIGSSIKVDKDKFQV 397
L Y + W+ L++ VK I S DKD Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 392 QVNLDVQHFTPEEISVKTVDGYIVVEAKHEEKKDEHG 502
Q+N+ + +FTP ++ + + +V + E KD++G
Sbjct: 161 QLNIPINNFTPSQLQLLGITNSTIV-GESENGKDQNG 196
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 648 TFLSPLIASGTFLGAVIVSTPSDESLDST-VSGADP 544
+F+S + A T GAVIV P+ ++ T VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -2
Query: 495 SSFFSSCLASTTIYPSTVLTEISSGVKC*TSKLTWNLSLSTLMLDPIS 352
SS SS ++S ++ S++ + IS+ TSK N +STL+ P S
Sbjct: 377 SSMDSSAVSSYSVVQSSLASIISNAYIA-TSKSGLNSGVSTLLASPTS 423
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 651 ATFLSPLIASG--TFLGAVIVSTPSDESLDSTVSGADPS 541
A+ LSPL + T L + I++ +DESL T+S A S
Sbjct: 242 ASLLSPLDTTSFSTKLDSTILALETDESLSRTISYATTS 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,672
Number of Sequences: 5004
Number of extensions: 47680
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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