Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J17
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    67   2e-12
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.89 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.0  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   4.7  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   4.7  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.2  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   8.3  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 32/90 (35%), Positives = 57/90 (63%)
 Frame = +3

Query: 192 DLAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFADAF 371
           DL Q+  +  +L S++++V  YV+ V+ G + A+ AVGR L++  S +P +    F   F
Sbjct: 212 DLQQLRRSTLELLSMIERVSDYVQNVIDGSSPANVAVGRYLMKCFSLIPCVEGQDFEKIF 271

Query: 372 ASGVKDLLMVVTLAQLIKTQLQLNEKLTLL 461
           +S ++D+L+VV LA  ++TQ+ +  +L LL
Sbjct: 272 SSHLQDVLVVVYLANTLRTQVDIASRLNLL 301


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -1

Query: 418 SCASVTTMSRSLTPEANASAKVSAARLGSALTSSSSCRPTALSAS 284
           S + +T++  S + ++++S+    +   + LTSSSS  PT+ S+S
Sbjct: 76  SSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSS 120


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/78 (20%), Positives = 34/78 (43%)
 Frame = -1

Query: 511 TLSAAEGGAPGTTYCDXXXXXXXXXXXXVLMSCASVTTMSRSLTPEANASAKVSAARLGS 332
           T SA+      ++                  S  S +  S SLT  +  S+ ++++   S
Sbjct: 67  TSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTS 126

Query: 331 ALTSSSSCRPTALSASAL 278
           +  +SSS   ++L++S++
Sbjct: 127 SSLASSSITSSSLASSSI 144



 Score = 26.6 bits (56), Expect = 2.7
 Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 1/109 (0%)
 Frame = -1

Query: 505 SAAEGGAPGTTYCDXXXXXXXXXXXXVLMSCASVTTMSRSLT-PEANASAKVSAARLGSA 329
           S     A  T                 L S  S T+ S S T P  N S+ +  + + S 
Sbjct: 478 STTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSST 537

Query: 328 LTSSSSCRPTALSASALPEXXXXXXXXXXXXXXXXXXXXXATCARSATG 182
             SS++   TA SAS+ P                       + A  +TG
Sbjct: 538 PLSSANST-TATSASSTPLTSVNSTTATSASSTPFGNSTITSSASGSTG 585



 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -1

Query: 403 TTMSRSLTPEANASAKVSAARLGSALTSSSSCRPTALSA--SALPEXXXXXXXXXXXXXX 230
           TT     T  A++S+  S++   S+LTSSSS   ++ ++  SA P               
Sbjct: 60  TTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSL 119

Query: 229 XXXXXXXATCARSA 188
                  ++ A S+
Sbjct: 120 ASSSTTSSSLASSS 133


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 192 DLAQVAEAASKLSSLLDQVVQYVEEVLSGR-AEADNAVGRQ--LLELVSALPSLAADT 356
           DL  + + A+ +S+ +  +V+Y+EEVL+    E DN    +   ++   AL S  +DT
Sbjct: 251 DLGSIVDIAT-MSTRMQHLVRYLEEVLNAMYEEFDNVFKSEASFIKTFDALVSKYSDT 307


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/73 (19%), Positives = 33/73 (45%)
 Frame = -1

Query: 505 SAAEGGAPGTTYCDXXXXXXXXXXXXVLMSCASVTTMSRSLTPEANASAKVSAARLGSAL 326
           S++   +  ++                  S +S ++ S S  P  ++++   ++   S+ 
Sbjct: 167 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSS 226

Query: 325 TSSSSCRPTALSA 287
           +SSSS RP++ S+
Sbjct: 227 SSSSSSRPSSSSS 239


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 412 ASVTTMSRSLTPEANASAKVSAARLGSALTSSSSCRPTALSASA 281
           +S T+ S S TP   +S+  S++   S+ + SSS    + S S+
Sbjct: 130 SSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSS 173


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 418 SCASVTTMSRSLTPEANASAKVSAARLGSALTSSSSCRPTALSAS 284
           S +S TT + S  P  N S+ + ++ + SA  SSSS  PT++  S
Sbjct: 210 SSSSFTTTTGS--PYYNTSSFLPSSVISSASLSSSSVLPTSIITS 252


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 397 MSRSLTPEANASAKVSAARLGSALTSSSSCRPTALSASAL 278
           M RSLT  ANAS         ++LT   S   + LSAS+L
Sbjct: 522 MRRSLTVGANASCSNPTNLSFASLTLHDSKADSTLSASSL 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,767
Number of Sequences: 5004
Number of extensions: 21211
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)