Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J17
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 64 8e-11
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 39 0.003
05_05_0123 - 22553400-22554509 35 0.042
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203 31 0.91
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 31 0.91
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634... 30 1.2
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 2.1
12_02_0082 - 13372997-13373863,13373928-13374386 29 2.8
01_01_1154 - 9178427-9178738,9179819-9180874 29 2.8
12_01_0828 + 7663958-7664114,7664345-7664479,7664588-7664680,766... 29 3.7
06_01_0188 - 1464961-1466814 29 3.7
01_05_0745 - 24852048-24853532 28 4.8
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076... 28 6.4
05_01_0016 - 118975-119244,119363-119423,119934-120038,120601-12... 28 6.4
04_04_0251 + 23930789-23930960,23931065-23931128,23931641-239317... 28 6.4
03_05_0276 + 22646416-22646760,22646858-22647090,22647184-226472... 28 6.4
01_05_0579 + 23393632-23393734,23393765-23394513,23395958-233963... 28 6.4
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612... 27 8.5
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 64.1 bits (149), Expect = 8e-11
Identities = 29/87 (33%), Positives = 53/87 (60%)
Frame = +3
Query: 192 DLAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFADAF 371
DL + + KL L+D++ +YV++V+ GR DN +GR + + V+++P L+ F F
Sbjct: 191 DLEGMESSMEKLYVLIDEIYKYVDDVVEGRVAPDNKIGRFISDAVASMPKLSPAAFDKLF 250
Query: 372 ASGVKDLLMVVTLAQLIKTQLQLNEKL 452
++D L +V L+ + +TQ+ + EKL
Sbjct: 251 NDRIQDNLALVYLSSITRTQISIAEKL 277
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Frame = +3
Query: 171 RQVQPVADLAQVAEAASKLSSL------LDQVVQYVEEVLSGRAEADNAVGRQLLELVSA 332
R V+ E SKL++L L ++ Y++ V+ G+ ++ + L ++ +
Sbjct: 169 RDVKDTTISTLATEVTSKLAALKGLDARLREIRGYLDLVIEGKLPLNHEILYHLQDVFNL 228
Query: 333 LPSLAADTFADAFASGVKDLLMVVTLAQLIKTQLQLN 443
LP+L + AFA D+++V+ L+ LI++ + L+
Sbjct: 229 LPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVIALH 265
>05_05_0123 - 22553400-22554509
Length = 369
Score = 35.1 bits (77), Expect = 0.042
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +3
Query: 150 MGGGGRARQVQPVADLAQVAEAASKLSSL-LDQVVQYVEEVLSGRAEADNAVGRQL-LEL 323
+GGGG + +P+A A KL L L +Q VEE+L GR A RQL +
Sbjct: 45 LGGGGARWEQEPLASPADELFYKGKLLPLHLPPRIQMVEELLDGRVVVGGAGRRQLAIST 104
Query: 324 VSALP--SLAADTFADAFASG 380
A P S A +ASG
Sbjct: 105 APATPYDSCTASPANSCYASG 125
>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
Length = 357
Score = 30.7 bits (66), Expect = 0.91
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +3
Query: 183 PVADLAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFA 362
P+ L E + LD +E+VL + DN V L A P D F
Sbjct: 55 PLPSLDASEEDGAARDDDLDSQDLKLEQVLQKASMGDNTVILTTLNSAWASPGSVIDLFI 114
Query: 363 DAFASGVK 386
D+F SGV+
Sbjct: 115 DSFRSGVR 122
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 30.7 bits (66), Expect = 0.91
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 202 CARSAT-GCTWRARPPPPIV 146
C + A GC WRA PPPP V
Sbjct: 298 CKKEAEDGCLWRAMPPPPYV 317
>02_04_0123 +
19961904-19962096,19962836-19963029,19963334-19963465,
19963921-19964038,19964248-19964484,19964576-19964658,
19964777-19965004,19965394-19965470,19965590-19965626,
19965786-19965952,19966156-19966234,19966301-19966378,
19967459-19967575,19967999-19968379,19968453-19968590,
19968680-19968769,19968832-19968840
Length = 785
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 213 AASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFADAFASGVKDL 392
A K++SLLDQ+VQ + ++S + G L VS + ++ D S + D
Sbjct: 316 ALRKITSLLDQLVQLL--IISFTSTTQRLDGIYTLFAVSRIVAVDTDASLPTICSAIYDA 373
Query: 393 LMVVTLAQLI-KTQLQLNEKLTL 458
V L LI + +L N L+L
Sbjct: 374 CGQVDLFTLICQNELSSNSALSL 396
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 195 LAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFA--DA 368
+A++ A KLS+ D + Q V +V + +ADN GR L++ L + + + +
Sbjct: 863 VAKMDGFAGKLSNYKDTIDQLVSQVANVHQDADNHAGR-LIDQAELLQNDVTERISTLEK 921
Query: 369 FASGVKDLLMVVT--LAQLIKTQL 434
+ + D+LM VT L+ L K L
Sbjct: 922 ERTSLTDVLMEVTDKLSALSKNAL 945
>12_02_0082 - 13372997-13373863,13373928-13374386
Length = 441
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 574 KAVSCFITIFNNMIMRLQYA 515
K +SC+I +F NM +R Q+A
Sbjct: 90 KTISCYIGVFGNMALRAQHA 109
>01_01_1154 - 9178427-9178738,9179819-9180874
Length = 455
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = -1
Query: 382 TPEANASAKVSAARLGSALTSSSSCRPTALSASALPEXXXXXXXXXXXXXXXXXXXXXAT 203
+P A+A L A + +++ RP A +ASAL + A
Sbjct: 3 SPSLAAAAASPLTSLDLATSPATASRPAAAAASALRKRPVLLLDQRHHPSTPNLDSSAAA 62
Query: 202 CARSATGCTWRARPPPP 152
A +A +A+PPPP
Sbjct: 63 AAAAAAAGVAQAQPPPP 79
>12_01_0828 +
7663958-7664114,7664345-7664479,7664588-7664680,
7667122-7668368
Length = 543
Score = 28.7 bits (61), Expect = 3.7
Identities = 26/87 (29%), Positives = 36/87 (41%)
Frame = +3
Query: 9 GLRAYVCVALGVPRGKQGLHCSXXHRXRLAHFLRTRDSWTTAVPXRTMGGGGRARQVQPV 188
GLRA+ + + R GL R FLR S P R GG G A + QP
Sbjct: 315 GLRAHGELIIDRERSPDGLGMPDFTR-----FLRRALSLPRDAPTRPGGGHGDATKPQPR 369
Query: 189 ADLAQVAEAASKLSSLLDQVVQYVEEV 269
L ++ ++L D V + E+V
Sbjct: 370 PRLLIISRRGTRLLLNTDAVARAAEQV 396
>06_01_0188 - 1464961-1466814
Length = 617
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = -3
Query: 188 HRLHLAGPAAAPHRSSWHSCSPTISGS*EVSETXSMGX*TMQPLLPSRHPECDTHVGAQA 9
H + AGP+ A + +S SP+ S S S G M P P + PE D G A
Sbjct: 152 HGMAAAGPSLAAAKKEEYSKSPSDSSS---SSGTDGGSSAMMP--PPQPPEFDARNGVPA 206
Query: 8 P 6
P
Sbjct: 207 P 207
>01_05_0745 - 24852048-24853532
Length = 494
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 452 DTTHVAVSGPGRSALGRRQSLRIL 523
D +H A+SGP +ALGR SLR L
Sbjct: 286 DLSHNALSGPIPAALGRLSSLRSL 309
>09_06_0309 -
22206812-22206884,22207008-22207103,22207531-22207619,
22207738-22207820,22207932-22208048,22208132-22208319,
22208430-22208500,22208570-22208782,22210022-22210081,
22210186-22210476,22210590-22211894
Length = 861
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 184 GCTWRARPPPP-IVLXGTAVVQL 119
GC W A PPPP I L T + ++
Sbjct: 415 GCIWLASPPPPAIALAPTTIEEI 437
>05_01_0016 -
118975-119244,119363-119423,119934-120038,120601-120663,
120845-120963
Length = 205
Score = 27.9 bits (59), Expect = 6.4
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +3
Query: 84 RXRLAHFLRTRDSWTTAVPXRTMGGGGRARQVQPVADLAQVAEAASKLSSLLDQVVQYVE 263
R + H LRT +W R GGGG V+ + + EAA+ SLL ++
Sbjct: 16 RDGVLHGLRTEAAWLVGDEMRWDGGGGVPAAVE---EEEEDEEAAASSRSLLHTTLKRAR 72
Query: 264 EVLSGRAEADNAVGRQLLELVS--ALPSLAADTFAD 365
+ + N GR + + LP AD+ +D
Sbjct: 73 GMEHYSTKFSNGGGRLVDPMPDRRTLPVYRADSASD 108
>04_04_0251 +
23930789-23930960,23931065-23931128,23931641-23931747,
23931832-23931899,23932068-23932097,23932357-23932460,
23932558-23932662,23932815-23932904,23932982-23933057,
23933292-23933361,23933799-23933869,23933945-23934035,
23934192-23934319,23934547-23934675,23934762-23934902
Length = 481
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -1
Query: 163 PPPPIVLXGTAVVQLSLVXXXXXXXXRWXCEQCSPCFPRGTPSA 32
PPPP A SLV CSP P G+PSA
Sbjct: 8 PPPPDAASAAAAAP-SLVPAVSAAAVAATTVSCSPQPPTGSPSA 50
>03_05_0276 +
22646416-22646760,22646858-22647090,22647184-22647259,
22647383-22647459,22647559-22647592,22647699-22647848,
22647935-22648069,22648156-22648227
Length = 373
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +3
Query: 195 LAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFADAFA 374
L +VAE +S L V Y++ LS + ++ RQ L+L+ L A + +
Sbjct: 146 LVEVAEEYKLVSDTLYLTVSYIDRFLSAK-----SINRQKLQLLGVSAMLIASKYEEISP 200
Query: 375 SGVKDLLMV 401
V+D +
Sbjct: 201 PNVEDFCYI 209
>01_05_0579 +
23393632-23393734,23393765-23394513,23395958-23396315,
23396830-23396852
Length = 410
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 392 QVLDAGSERVGKGVGGEARQR 330
++ DAGS R G GVGG RQR
Sbjct: 263 ELADAGSIRWGSGVGGGWRQR 283
>05_02_0052 +
6124880-6124956,6125097-6125250,6125327-6125920,
6126344-6126757,6126835-6126846
Length = 416
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 72 SXXHRXRLAHFLRTRDSWTTAVPXRTMGGGGRARQ 176
S H RLA + + + A P T GGGG Q
Sbjct: 208 SKIHAARLAQYYQIMEMAARASPAATAGGGGGENQ 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,291,978
Number of Sequences: 37544
Number of extensions: 202538
Number of successful extensions: 1099
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -