Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J17
         (592 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U94855-1|AAD03467.1|  357|Homo sapiens translation initiation fa...    85   1e-16
CR456959-1|CAG33240.1|  357|Homo sapiens EIF3S5 protein.               85   1e-16
BT006894-1|AAP35540.1|  357|Homo sapiens eukaryotic translation ...    85   1e-16
BC000490-1|AAH00490.1|  357|Homo sapiens eukaryotic translation ...    85   1e-16
AK095574-1|BAC04577.1|  350|Homo sapiens protein ( Homo sapiens ...    85   1e-16
AF354444-1|AAK18634.1|  348|Homo sapiens IFP38 protein.                71   4e-12

>U94855-1|AAD03467.1|  357|Homo sapiens translation initiation
           factor 3 47 kDa subunit protein.
          Length = 357

 Score = 85.4 bits (202), Expect = 1e-16
 Identities = 42/91 (46%), Positives = 58/91 (63%)
 Frame = +3

Query: 189 ADLAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFADA 368
           +DL QV  A++++   L  V+QY E+VLSG+  ADN VGR L+ LV+ +P +  D F   
Sbjct: 267 SDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETM 326

Query: 369 FASGVKDLLMVVTLAQLIKTQLQLNEKLTLL 461
             S + DLLMV  LA L ++Q+ LNEKL  L
Sbjct: 327 LNSNINDLLMVTYLANLTQSQIALNEKLVNL 357


>CR456959-1|CAG33240.1|  357|Homo sapiens EIF3S5 protein.
          Length = 357

 Score = 85.4 bits (202), Expect = 1e-16
 Identities = 42/91 (46%), Positives = 58/91 (63%)
 Frame = +3

Query: 189 ADLAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFADA 368
           +DL QV  A++++   L  V+QY E+VLSG+  ADN VGR L+ LV+ +P +  D F   
Sbjct: 267 SDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETM 326

Query: 369 FASGVKDLLMVVTLAQLIKTQLQLNEKLTLL 461
             S + DLLMV  LA L ++Q+ LNEKL  L
Sbjct: 327 LNSNINDLLMVTYLANLTQSQIALNEKLVNL 357


>BT006894-1|AAP35540.1|  357|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 5 epsilon, 47kDa protein.
          Length = 357

 Score = 85.4 bits (202), Expect = 1e-16
 Identities = 42/91 (46%), Positives = 58/91 (63%)
 Frame = +3

Query: 189 ADLAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFADA 368
           +DL QV  A++++   L  V+QY E+VLSG+  ADN VGR L+ LV+ +P +  D F   
Sbjct: 267 SDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETM 326

Query: 369 FASGVKDLLMVVTLAQLIKTQLQLNEKLTLL 461
             S + DLLMV  LA L ++Q+ LNEKL  L
Sbjct: 327 LNSNINDLLMVTYLANLTQSQIALNEKLVNL 357


>BC000490-1|AAH00490.1|  357|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 5 epsilon, 47kDa protein.
          Length = 357

 Score = 85.4 bits (202), Expect = 1e-16
 Identities = 42/91 (46%), Positives = 58/91 (63%)
 Frame = +3

Query: 189 ADLAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFADA 368
           +DL QV  A++++   L  V+QY E+VLSG+  ADN VGR L+ LV+ +P +  D F   
Sbjct: 267 SDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETM 326

Query: 369 FASGVKDLLMVVTLAQLIKTQLQLNEKLTLL 461
             S + DLLMV  LA L ++Q+ LNEKL  L
Sbjct: 327 LNSNINDLLMVTYLANLTQSQIALNEKLVNL 357


>AK095574-1|BAC04577.1|  350|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38255 fis, clone FCBBF3001020, highly similar to
           EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 5. ).
          Length = 350

 Score = 85.4 bits (202), Expect = 1e-16
 Identities = 42/91 (46%), Positives = 58/91 (63%)
 Frame = +3

Query: 189 ADLAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNAVGRQLLELVSALPSLAADTFADA 368
           +DL QV  A++++   L  V+QY E+VLSG+  ADN VGR L+ LV+ +P +  D F   
Sbjct: 260 SDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETM 319

Query: 369 FASGVKDLLMVVTLAQLIKTQLQLNEKLTLL 461
             S + DLLMV  LA L ++Q+ LNEKL  L
Sbjct: 320 LNSNINDLLMVTYLANLTQSQIALNEKLVNL 350


>AF354444-1|AAK18634.1|  348|Homo sapiens IFP38 protein.
          Length = 348

 Score = 70.5 bits (165), Expect = 4e-12
 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
 Frame = +3

Query: 189 ADLAQVAEAASKLSSLLDQVVQYVEEVLSGRAEADNA---VGRQLLELVSALPSLAADTF 359
           +DL QV  A++ +   L  V+QY E++LS +  ADN    VG  L+ LV+ +P +  D F
Sbjct: 255 SDLQQVGGASAHIQDALSIVLQYAEDILSAKVSADNTIRKVGHFLMSLVNQVPKIVPDDF 314

Query: 360 ADAFASGVKDLLMVVTLAQLIKTQLQLNEK 449
                S + DLLMV  LA L ++Q+ LNEK
Sbjct: 315 ETMLHSNINDLLMVAYLANLTQSQIALNEK 344


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,180,641
Number of Sequences: 237096
Number of extensions: 1026410
Number of successful extensions: 3881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3880
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)