Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J12
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 162 3e-41
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 113 2e-26
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 109 4e-25
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 105 6e-24
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 98 1e-21
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 91 8e-20
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 89 6e-19
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 72 5e-14
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 42 5e-05
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 27 1.5
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.2
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 25 6.2
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 25 6.2
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 6.2
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 6.2
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 25 8.2
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 162 bits (394), Expect = 3e-41
Identities = 77/107 (71%), Positives = 91/107 (85%)
Frame = +3
Query: 24 QPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDG 203
Q +++L+EGTD +QG+ QL+SNINAC V D +RTTLGP G DKL+VD G+ VISNDG
Sbjct: 7 QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 204 ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLR 344
ATIMKLLDIVHPAAKTLVDIA++QDAEVGDGTTSVV+ AGELL+ R
Sbjct: 67 ATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREAR 113
Score = 78.2 bits (184), Expect = 8e-16
Identities = 38/75 (50%), Positives = 53/75 (70%)
Frame = +1
Query: 358 KQGVHPRVIVRAVRTAAKLAVDKVKELAVKIDKKSPEEQRELLRKCAETAMSSQLIYRRK 537
+ GV +I+R R AA+LAV+K+KE+A+ +D + R+LL KCA TAM+S+LI
Sbjct: 117 EDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNS 176
Query: 538 DHFSKMVVDAVLSLD 582
F+KMVVDAVL+LD
Sbjct: 177 TFFTKMVVDAVLTLD 191
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 113 bits (272), Expect = 2e-26
Identities = 54/93 (58%), Positives = 72/93 (77%), Gaps = 2/93 (2%)
Frame = +3
Query: 60 QTQGKPQLI--SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIV 233
Q + KPQ + SNI A + V DA+RT+LGP+GMDK+I G+ +++NDGATI+K L ++
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71
Query: 234 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGELL 332
HPAAK LVD++ +QD E GDGTTSVVILAG +L
Sbjct: 72 HPAAKMLVDLSAAQDVEAGDGTTSVVILAGSML 104
Score = 46.0 bits (104), Expect = 4e-06
Identities = 26/77 (33%), Positives = 45/77 (58%)
Frame = +1
Query: 358 KQGVHPRVIVRAVRTAAKLAVDKVKELAVKIDKKSPEEQRELLRKCAETAMSSQLIYRRK 537
K+G+HP VI + + AA VD +KE A+ I+ RE L + A T+++S+++ +
Sbjct: 112 KKGIHPTVIAESFQRAAGFTVDCMKENALAIEL----SDRESLLRAATTSLNSKIVSQYS 167
Query: 538 DHFSKMVVDAVLSLDAP 588
+ + + VDAVL + P
Sbjct: 168 NLLAPIAVDAVLKVIDP 184
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 109 bits (261), Expect = 4e-25
Identities = 47/110 (42%), Positives = 76/110 (69%)
Frame = +3
Query: 21 MQPQILLLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 200
MQ + ++ ++ G +SNI A + V D +RT LGPR M K+++D G +++ND
Sbjct: 1 MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60
Query: 201 GATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKRLRPV 350
G I++ +++ HPAAK+++++A++QD EVGDGTTSV+ILAGE+L P+
Sbjct: 61 GHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPL 110
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 105 bits (251), Expect = 6e-24
Identities = 47/94 (50%), Positives = 68/94 (72%)
Frame = +3
Query: 57 DQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDIVH 236
++ G+ N+ A + + V+++LGP G+DK++VD G ++NDGATI+ LLD+ H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 237 PAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKR 338
PA K LV++A+ QD EVGDGTTSVVI+A ELL+R
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRR 108
Score = 41.9 bits (94), Expect = 7e-05
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 358 KQGVHPRVIVRAVRTAAKLAVDKVKE-LAVKIDKKSPEEQRELLRKCAETAMSSQLIYRR 534
K +HP I+ R A + AV + + L+ +D +E L A+T+MSS++I
Sbjct: 114 KNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLG----KESLINVAKTSMSSKIIGND 169
Query: 535 KDHFSKMVVDAVLSL 579
D FS M VDA+LS+
Sbjct: 170 SDFFSTMAVDAMLSV 184
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 97.9 bits (233), Expect = 1e-21
Identities = 49/111 (44%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 RNIKMQPQILLL-REGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKA 185
R+ + P IL+ +E + G + S+I A + V + VRT+LGPRG+DK+++ G+
Sbjct: 11 RDDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEI 70
Query: 186 VISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKR 338
++NDGATI+ +++ H AK LV ++KSQD E+GDGTT VV+LAG LL++
Sbjct: 71 TVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQ 121
Score = 46.0 bits (104), Expect = 4e-06
Identities = 25/73 (34%), Positives = 43/73 (58%)
Frame = +1
Query: 361 QGVHPRVIVRAVRTAAKLAVDKVKELAVKIDKKSPEEQRELLRKCAETAMSSQLIYRRKD 540
+G+HP I A ++AV + ++ +D SPE L R A+T++ S+++ + D
Sbjct: 128 KGIHPIRIADGYEKACQVAVKHLDAISDVVDF-SPENTTNLFRS-AKTSLGSKVVSKAHD 185
Query: 541 HFSKMVVDAVLSL 579
HF+ + VDAVLS+
Sbjct: 186 HFANIAVDAVLSV 198
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 91.5 bits (217), Expect = 8e-20
Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Frame = +3
Query: 39 LLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHS-GKAVISNDGATIM 215
+ E Q +G+ +S+ V D V++TLGP+GMDK++ +S G V++NDGATI+
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 216 KLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKR 338
K + + + AAK LV+I+K QD EVGDGTTSV + A ELL++
Sbjct: 68 KSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQ 108
Score = 54.8 bits (126), Expect = 9e-09
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +1
Query: 367 VHPRVIVRAVRTAAKLAVDKVKELAVKIDKKS-PEEQRELLRKCAETAMSSQLIYRRKDH 543
+HP+VI+ R A K A+D ++ A ID S P + R L A T +SS+++ + K+H
Sbjct: 117 IHPQVIIDGYRIATKTAIDALR--ASSIDNSSDPAKFRSDLENIARTTLSSKILSQNKNH 174
Query: 544 FSKMVVDAVLSL 579
F+++ VDAVL L
Sbjct: 175 FAQLAVDAVLRL 186
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 88.6 bits (210), Expect = 6e-19
Identities = 42/101 (41%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Frame = +3
Query: 39 LLREGTDQTQG-KPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIM 215
L REG QG + +I N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 216 KLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKR 338
+ L+++HPAAK +VD + Q+ E+GD VV+ GELL +
Sbjct: 73 RELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAK 113
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 72.1 bits (169), Expect = 5e-14
Identities = 37/100 (37%), Positives = 56/100 (56%)
Frame = +3
Query: 39 LLREGTDQTQGKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDGATIMK 218
LL + Q L NI+A + D +++ LGP G K++VD +G ++ DG ++
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
Query: 219 LLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGELLKR 338
+ I +P A + A +QD GDGTTSV +L GELLK+
Sbjct: 64 EMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQ 103
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 42.3 bits (95), Expect = 5e-05
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +3
Query: 120 AVRTTLGPRGMDKLIVDHSGKAVISNDGATIMKLLDI----VHPAAKTLVDIAKSQDAEV 287
AV TLGP+G + LI G I+ DG T+ + + + + A+ + D+A +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVA 116
Query: 288 GDGTTSVVIL 317
GDGTT+ +L
Sbjct: 117 GDGTTTATVL 126
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 354 SKRASISSEVHQLRLQPM*YHHR 286
S+ A + +V QL+L+P YHH+
Sbjct: 460 SQVAGLKQQVEQLKLEPFKYHHQ 482
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 369 DPLLSSKRASISSEVHQLRLQPM*YHH 289
D + S + SIS+EVH RL+ Y+H
Sbjct: 544 DTIPSRFKTSISTEVHDGRLKKYPYYH 570
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 154 SMPLGPSVVRTASTTSWQALM 92
S+PL PSVV+ ST S Q L+
Sbjct: 211 SIPLAPSVVQVLSTFSAQELL 231
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 340 NLFRSSPAKITTDVVPSPTSAS*DLAMSTKVFAAGC 233
NLF + PA ++V+ + + + +A TK+F A C
Sbjct: 109 NLFYNEPAIELSNVINNSLAKNSGIAGPTKIFFANC 144
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 196 FEITALPL*STISLSMPLGPSVV 128
F+I L S+I+ S+PL PS++
Sbjct: 252 FQIAGFMLLSSIAASLPLSPSII 274
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 155 VHAPWAKCCADSINNQLAGIDVRYKLRL 72
VH+P AK + + N +GID+ ++L
Sbjct: 287 VHSPEAKVTENDVENVQSGIDIEKTIQL 314
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 485 RSSLCSSGDFLSIFTANSLTLSTAN 411
+SS+ S D LS+ ANS T+ST+N
Sbjct: 279 QSSIQPSDDPLSLEVANSETVSTSN 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,409
Number of Sequences: 5004
Number of extensions: 47222
Number of successful extensions: 145
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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