Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J11
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    26   1.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    24   7.9  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    24   7.9  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    24   7.9  

>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 278 LSRVLETNLFILQYKRDS*KSFEAKL 201
           + RVL    +ILQYKR S  S + KL
Sbjct: 413 IDRVLNQQAYILQYKRKSTSSSKHKL 438


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 327  IWLFFFLCYFRVKWFLAITCV 265
            I +F F+  F V W+L   C+
Sbjct: 1684 ITVFMFIIVFEVSWYLEAWCL 1704


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 191 VDLLTSLQMIFSYHACIGV*TN*FPTH 271
           VD+L  L M+  Y ACI +  N    H
Sbjct: 193 VDMLLGLDMLRRYQACIDLENNVLRIH 219


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 271 VCWKLICLYSNTSVIAKNHLKRS*QINHID 182
           +CWK IC+  + S+  +  L R+ ++   D
Sbjct: 126 ICWKTICVSCDKSIQKQRLLARNPELTAED 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,150,624
Number of Sequences: 5004
Number of extensions: 17957
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)