Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J11
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0146 - 21260967-21261055,21261464-21261568,21261851-212619...    27   4.2  
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315...    27   5.6  
04_03_0513 - 16681227-16683936,16685572-16685966                       26   7.4  

>03_05_0146 -
          21260967-21261055,21261464-21261568,21261851-21261936,
          21262144-21262253,21262370-21262474
          Length = 164

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 64 GWRPRSTCTSWRGCRASAS 8
          GWR    C+S+RGC +S +
Sbjct: 6  GWRRLRRCSSYRGCSSSTN 24


>01_01_0419 -
           3146851-3147339,3148428-3148663,3148847-3149793,
           3150258-3150356,3151128-3151501
          Length = 714

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -1

Query: 160 RTAAPLRSSLST**YTVTRDSCCRALGCWR*AGWRPRSTCTSWRGCRASAS 8
           ++AA LR   S   +T+T DS C        A WR  + C  W G R   +
Sbjct: 9   QSAALLRLKRS---FTITNDSQCTL------ASWRAGTDCCRWEGVRCGGA 50


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -1

Query: 118 YTVTRDSCCRALGCWR*AGWRPRSTCTSWRGCRAS 14
           ++ T DS C        A WRP + C  W G   S
Sbjct: 64  FSPTNDSACTL------ASWRPGTDCCDWEGVACS 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,262,228
Number of Sequences: 37544
Number of extensions: 103828
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)