Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J10
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 244 1e-65
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 137 1e-33
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 132 3e-32
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 128 7e-31
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.3
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 28 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.8
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 27 1.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.3
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.1
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 4.1
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 4.1
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 5.4
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 5.4
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 5.4
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 244 bits (596), Expect = 1e-65
Identities = 105/136 (77%), Positives = 121/136 (88%)
Frame = +1
Query: 73 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 252
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 253 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 432
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 433 RKEAESCDCLQGFQLT 480
R+EAE+CD LQGFQLT
Sbjct: 121 RREAEACDALQGFQLT 136
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/42 (80%), Positives = 39/42 (92%)
Frame = +2
Query: 524 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLV 649
+SKIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLV
Sbjct: 152 LSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLV 193
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 137 bits (332), Expect = 1e-33
Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Frame = +1
Query: 73 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 246
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 247 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 426
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 427 VVRKEAESCDCLQGF 471
+R+ A++C LQGF
Sbjct: 121 KIRRIADNCSGLQGF 135
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +2
Query: 524 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVH 640
+ ++ EY + +SV P+P+VS +VVEPYN+ L+ H
Sbjct: 154 LERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTH 192
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 132 bits (320), Expect = 3e-32
Identities = 60/139 (43%), Positives = 87/139 (62%), Gaps = 6/139 (4%)
Frame = +1
Query: 73 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 234
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 235 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 414
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 415 SVLDVVRKEAESCDCLQGF 471
SVL+ +R+ A++C LQGF
Sbjct: 121 SVLERIRRMADNCSGLQGF 139
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +2
Query: 524 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVH 640
+ ++ EY + +SV P+P+VS +VVEPYN+ L+ H
Sbjct: 158 LERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTH 196
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 128 bits (309), Expect = 7e-31
Identities = 54/136 (39%), Positives = 92/136 (67%), Gaps = 2/136 (1%)
Frame = +1
Query: 76 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 255
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 256 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 429
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 430 VRKEAESCDCLQGFQL 477
+ +EA+ D L+GF L
Sbjct: 122 IDREADGSDSLEGFSL 137
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = +2
Query: 524 ISKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQL 646
+ ++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +L
Sbjct: 154 LERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRL 195
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 83 SCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITM 229
S +SR + + LSS S P+ TAS+ +LT+++ T S +T+
Sbjct: 427 STSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVTV 475
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 471 PTHTPSEAVLAPVWAPFSSLKY 536
P HT S L +W PFS L Y
Sbjct: 244 PLHTQSTDKLYTIWTPFSELHY 265
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.8
Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 1/192 (0%)
Frame = +2
Query: 56 SSDISK*GKSCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITMRX 235
SS IS S T + T S+ +S + +T +L ++T + + +S T
Sbjct: 242 SSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTAT 301
Query: 236 XXXXXXXXXXXXXXXXXXXXXXXRDPSDRSSAPTTSFSDSP-APVTTGLRDTTRKVLS*S 412
S +S TS S +P + V + + S
Sbjct: 302 SASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTS 361
Query: 413 IPS*T*FARKQSHVIVYKDSNSHXXXXXXXXXXXXXXISKIREEYPDRIMNTYSVVPSPK 592
+ S T + + + +++ + + P NT SV+P+
Sbjct: 362 VNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPS--YNTSSVLPTSS 419
Query: 593 VSDTVVEPYNAT 628
VS T + N+T
Sbjct: 420 VSSTPLSSANST 431
Score = 25.8 bits (54), Expect = 5.4
Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 1/183 (0%)
Frame = +2
Query: 83 SCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITMRXXXXXXXXXX 262
S +S P + +S S+P+++A++ TT+T S + S +
Sbjct: 369 SASSTPLTSVNSTSATSASSTPLTSANS----TTSTSVSSTAPSYNTSSVLPTSSVSSTP 424
Query: 263 XXXXXXXXXXXXXXRDPSDRSSAPTTSFSDSP-APVTTGLRDTTRKVLS*SIPS*T*FAR 439
S +S TS S +P + V + + S+ S T +
Sbjct: 425 LSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSA 484
Query: 440 KQSHVIVYKDSNSHXXXXXXXXXXXXXXISKIREEYPDRIMNTYSVVPSPKVSDTVVEPY 619
+ + +++ + + P NT SV+P+ VS T +
Sbjct: 485 SSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPS--YNTSSVLPTSSVSSTPLSSA 542
Query: 620 NAT 628
N+T
Sbjct: 543 NST 545
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -2
Query: 159 AVLIGDDLPELSSNLVSALSGLDVHDFPHFDISELNKLL 43
+++I D+L S + LSG ++ + H D+++L ++L
Sbjct: 273 SLIISDELNHTSIRFGARLSGANIRVYKHNDMTDLERVL 311
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.8
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Frame = +2
Query: 41 LSNLFSSDISK*GKSCTSRPDNAETRLELSSG-RSSPMSTASTPPVLTTATQTCSWSASM 217
LS SS S + TS P + + + SS SSP T ST ++ +++ S S+S+
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP--TPSTSSLMISSSSIISGSSSI 649
Query: 218 FITMRXXXXXXXXXXXXXXXXXXXXXXXXRDPSDR--SSAPTTSFSDSPAPVTTGLRDTT 391
+ S SS+P S S SP P ++ L T
Sbjct: 650 LSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTY 709
Query: 392 RKVLS 406
LS
Sbjct: 710 SASLS 714
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/97 (23%), Positives = 38/97 (39%)
Frame = +2
Query: 83 SCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITMRXXXXXXXXXX 262
S S P ++ + + S+ SS S +S L+T+++ S +S T+
Sbjct: 466 SSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSS---TLLSGSSAIPSTS 522
Query: 263 XXXXXXXXXXXXXXRDPSDRSSAPTTSFSDSPAPVTT 373
S SS PT+S SD + +TT
Sbjct: 523 SSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITT 559
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 112 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 213
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 408
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 168 GVDAVLIGDDLPELSSNLVSALSGLDVHDFPHFDISELNKLLNTNIFCSARTT 10
G+D +IG+D E S L S L+ LD P++ I N NT + +A T
Sbjct: 176 GIDIRIIGNDAGEKLSILSSTLARLD-RPAPNYGIDNYND-FNTFYYQAASGT 226
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 376 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 465
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 159 AVLIGDDLPELSSNLVSALSGLDVHDFPHFDISEL 55
A++ G L L+S L + + + D PHF +S +
Sbjct: 44 AIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHV 78
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 449 DSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 312
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 328 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 459
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 365 PAPDCPKTKLSGRKICPKGPERTESMVPGSRS 270
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -3
Query: 506 RSQYRLRGSVSWNPCKQSH-DSASLRTTSKTESTSSAPS 393
+S+YR + W C+Q H D SL K +PS
Sbjct: 383 KSEYRCSAASFWVECEQPHADLYSLNGVVKAPGAVQSPS 421
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -3
Query: 473 WNPCKQSHDSASLRTTSKT----ESTSSAPSV*CPLAQLLPAPDCPKTKLSG 330
++P +S D+ S RT S + TSS PS AQLL P K +G
Sbjct: 355 FSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNG 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,014
Number of Sequences: 5004
Number of extensions: 50139
Number of successful extensions: 190
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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