Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J09
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 32 0.057
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 30 0.23
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 0.40
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 29 0.70
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 29 0.70
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 28 1.2
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom... 27 1.6
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 1.6
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 3.7
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 26 5.0
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 26 5.0
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 8.7
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 8.7
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 25 8.7
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 32.3 bits (70), Expect = 0.057
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +3
Query: 273 CEICTKPLAEEECIRL--TCYHVFHWACAESRYRALPRTTAPAGYQCPSC 416
C +CT + I TCYHVFH +C + ++CP C
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYC 246
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 264 NPICEICTKPLAEEECIRLTCYHVFHWAC-AESRYR 368
N C C +PL E + C H FH +C E Y+
Sbjct: 834 NESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEKTYK 869
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 273 CEICTKPLAE-EECIRLTCYHVFHWACAESRYRALPRTTAPAGYQCPSCATPVFPP 437
C IC + + ++ + L C H FH C + + + CP+C T V PP
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPC-------IAKWIVDYRHACPTCNTEVPPP 369
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 0.70
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 258 DYNPICEICTKPLAEEECIR-LTCYHVFHWACAES 359
D C IC A ++ +R L C HVFH C ++
Sbjct: 200 DEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDT 234
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 273 CEICTKPLAEEECI--RLTCYHVFHWACAE 356
C IC +EE + L C+H+FH AC +
Sbjct: 498 CTICLCEYSEESPLYRELPCHHIFHPACID 527
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 270 ICEICTKPLAEEECIRLTCYHVFHWACAESRYRALP 377
+C IC K I TC H F CA +RYR P
Sbjct: 253 VCLICKKDYRSP--IATTCGHHFCEQCAITRYRKTP 286
>SPBC577.03c |||GCN5-related N-acetyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 186 CENCMVANHPKCIIQSYLQWLQDSDYNPICEICTKPLAEEE 308
C N ++ + KC + Y W+++ + + C++PL +E
Sbjct: 11 CGNLILVPYQKCHVLKYHNWMKNEELQEL--TCSEPLTLDE 49
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 273 CEICTKPL--AEEECIRLTCYHVFHWACAESRYRALPRTTAPAGYQCPSC 416
C IC + + + E I L+C H H C E R Y+CP+C
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIR--------TNYRCPTC 312
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 174 RVNVCE-NCMVANHPKCIIQ 230
+VNVC NCM N PK I +
Sbjct: 222 KVNVCYINCMTINEPKAIFE 241
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 327 YHVFHWACAESRYR 368
+H++HWA E+RYR
Sbjct: 162 HHLYHWAEFEARYR 175
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 341 LGMCRISLSGFTSDYSTSW 397
L +C+ +LS FT D S+SW
Sbjct: 121 LDLCKRNLSTFTIDISSSW 139
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 378 EVKPDNEIRHMPSEIHGNT*AEYIL 304
E K D E R++PS +H EY+L
Sbjct: 1171 EAKNDKESRYVPSAVHLVRRGEYLL 1195
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 186 CENCMVANHPKCIIQSYLQWLQDSDYN-PICE 278
CE C H KC+ S + QD + PIC+
Sbjct: 1112 CEICHEWYHAKCLKMSKKKLRQDEKFTCPICD 1143
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 273 CEICTKPLAEEECIRL--TCYHVFHWAC 350
C+ T A +EC TC H FH+ C
Sbjct: 55 CQANTDSAAAQECTVAWGTCNHAFHFHC 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,651
Number of Sequences: 5004
Number of extensions: 50105
Number of successful extensions: 172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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