Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J07
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 62 7e-11
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 42 6e-05
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 41 1e-04
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 40 4e-04
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 39 7e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 37 0.002
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 37 0.002
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 32 0.085
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 31 0.11
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 31 0.15
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 31 0.15
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.20
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 30 0.34
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 27 2.4
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 27 3.2
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 27 3.2
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 26 4.2
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 25 7.4
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 25 7.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 7.4
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 25 9.7
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 62.1 bits (144), Expect = 7e-11
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 18 TCNDCGRNFKQRIHIVRHMKIHSQFASKNKQFKCPYNHCQRVYSRNSNLKQHIMIKHV-R 194
+C+ CGR FK H+ H+ +H + K + CP C++ ++R+S LK+HI + H
Sbjct: 205 SCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGN 264
Query: 195 MTHECPICKAQLCTKAKLLNHLK 263
M C C + K L HL+
Sbjct: 265 MAFHCDSCGTKFGYKHMLQRHLE 287
Score = 40.3 bits (90), Expect = 2e-04
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 96 SKNKQFKCPYNHCQRVYSRNSNLKQHIMIKHVRMTHECP-ICKAQLCTKA-KLLNHLKLH 269
S K F CPY C + YSR S L+QH+ ++E P +C C+KA +HLK+H
Sbjct: 18 SAKKIFHCPYEECGKKYSRPSLLEQHLRTH----SNERPFVCDYTGCSKAFYRKSHLKIH 73
Query: 270 DVQKPNV 290
NV
Sbjct: 74 KRCHTNV 80
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +3
Query: 18 TCNDCGRNFKQRIHIVRHM-KIHSQFASKNKQFKCPYNHC--QRVYSRNSNLKQHIMIKH 188
T DC F + + H+ + H + S + CP+ C + + S L+ HI H
Sbjct: 147 TYQDCELRFATKQKLQNHVNRAHEKIIS----YSCPHESCVGHEGFEKWSQLQNHIREAH 202
Query: 189 VRMTHECPICKAQLCTKAKLLNHLKLH 269
V C IC Q T A L +H+ LH
Sbjct: 203 VP---SCSICGRQFKTAAHLRHHVVLH 226
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 9 KEFTCN--DCGRNFKQRIHIVRHMKIHSQFASKNKQFKCPYNHCQRVYSRNSNLKQHIMI 182
+ F C+ C + F ++ H+KIH + + K F C Y+ C + +L++HI +
Sbjct: 51 RPFVCDYTGCSKAFYRK----SHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEV 106
Query: 183 KHVRMTHEC 209
+ C
Sbjct: 107 HRKPKPYAC 115
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 108 QFKCPYNHCQRVYSRNSNLKQHIMIKHVRMTHECPICKAQLCTKAKLLNHLKLHDVQKPN 287
++ C YN C + +R N++ HI + C +CKA L HL++H+ +P
Sbjct: 442 KYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPY 501
Query: 288 V 290
V
Sbjct: 502 V 502
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 9 KEFTCNDCGRNFKQRIHIVRHMKIHSQFASKNKQFKCPYNHCQRVYSRNSNLKQHIMIKH 188
K + C C R F ++ H VRH++ H+ K F+C Y C++ ++R L +H+ H
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTG----EKPFECSYPSCKKRFTRRDELIRHVR-TH 56
Query: 189 VR 194
+R
Sbjct: 57 LR 58
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 198 THECPICKAQLCTKAKLLNHLKLHDVQKP 284
++ECP CK + + H++ H +KP
Sbjct: 3 SYECPFCKRVFHRQEHQVRHIRSHTGEKP 31
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 9 KEFTCNDCGRNFKQRIHIVRHMKIHSQFASKNKQFKCPYNHCQRVYSRNSNLKQH 173
K F C +C + FK+ H+ RH++ + K F C C + +SR NL+QH
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIR---SLHTSEKPFVC---ICGKRFSRRDNLRQH 469
Score = 32.7 bits (71), Expect = 0.049
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 105 KQFKCPYNHCQRVYSRNSNLKQHIMIKHVRMTHECPICKAQLCTKAKLLNHLKLHDVQKP 284
K F CP C + + R+ +L++HI H IC + + L H +LH P
Sbjct: 421 KSFVCP--ECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQHERLHVNASP 478
Query: 285 NV 290
+
Sbjct: 479 RL 480
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 38.7 bits (86), Expect = 7e-04
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 30 CGRNFKQRIHIVRHMKIHSQFASKNKQFKCPYNHCQRVYSRNSNLKQHIMIKHVR 194
C ++F ++ H RH + H+ +K F CP HC ++R+ L +H+ KHV+
Sbjct: 24 CTKSFTRKEHARRHFRSHTN----SKAFICP--HCSSSFTRSDVLNRHVNQKHVK 72
Score = 28.7 bits (61), Expect = 0.79
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +3
Query: 108 QFKCPYNHCQRVYSRNSNLKQHIMIKHVRMTHECPICKAQLCTKAKLLN 254
++KC + C + ++R + ++H CP C + T++ +LN
Sbjct: 16 RYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSF-TRSDVLN 63
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 18 TCNDCGRNFKQRIHIVRHMKIHSQFASKNKQFKCPYNHCQRVYSRNSNLKQHIMIKHVR 194
T DC ++F ++ H+ RH + H K F C + C R ++R+ L +H+ H++
Sbjct: 29 TYPDCPKSFTRKEHLRRHERTHENV----KAFSCSF--CNRAFARSDVLNRHVQQMHLQ 81
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 3 TRKEFTCNDCGRNFKQRIHIVRHMKIHSQFASKNKQFKCPYNHCQRVYSRNSNLKQHIMI 182
+++ F C+ C + F + ++ RH H SK + CPY C+ R LK+HI
Sbjct: 27 SKRVFPCDQCAKRFTRHENLTRHKACH----SKAEPIPCPY--CEIKCKRKDLLKRHIQR 80
Query: 183 KH 188
H
Sbjct: 81 FH 82
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.9 bits (69), Expect = 0.085
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 111 FKCPYNHCQRVYSRNSNLKQHIMIKHVRMTHECPICKAQLCTKAKLLNHLKLH 269
+ C + C + ++R NLK H+ +C ICK + H +LH
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLH 622
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 15 FTCNDCGRNFKQRIHIVRHMKIHSQFASKNKQFKCPYNHCQRVYSRNSNLKQH 173
+ C +C + F + +KIH+ + + F C Y C + ++ SN+++H
Sbjct: 468 YRCTECLQGFSRP----SSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRH 516
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 31.1 bits (67), Expect = 0.15
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +3
Query: 9 KEFTCNDCGRNFKQRIHIVRHMKIHSQFASKNKQFKCPY-----NHCQRVYSRNSNLKQH 173
K++ C C R F + H+ RH++ H + K F C C R +SR L +H
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSH----TNEKPFTCSEIDGLPTGCGRQFSRRDLLLRH 123
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Frame = +3
Query: 9 KEFTCND-------CGRNFKQRIHIVRH-MKIH 83
K FTC++ CGR F +R ++RH KIH
Sbjct: 96 KPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH 128
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 31.1 bits (67), Expect = 0.15
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 30 CGRNFKQRIHIVRHMK-IHSQFASKNKQFKCPYNHCQRVYSRNSNLKQHIMIKHVR 194
C F + ++RH IH A F+C QR +SR+ L +H+ +KH R
Sbjct: 585 CNTVFSRTYDLIRHQDTIH---AKTRPVFRCEICGDQRHFSRHDALVRHLRVKHGR 637
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 30.7 bits (66), Expect = 0.20
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +3
Query: 6 RKEFTC--NDCGRNFK---QRIHIVRHMKIHSQFASKNKQFKCPYNHCQRVYSRNSNLKQ 170
R ++TC +DC R R +V H++ H+ K F C C R ++R+ L +
Sbjct: 70 RPKYTCEWDDCPRKGMVQTSRFALVAHLRSHTG----EKPFICSVPECDRSFTRSDALAK 125
Query: 171 HIMIKH 188
H+ H
Sbjct: 126 HMRTVH 131
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 29.9 bits (64), Expect = 0.34
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 102 NKQFKCPYNHCQRVYSRNSNLKQHIMIKH 188
+K +KCP +C + Y + LK H + H
Sbjct: 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGH 375
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 228 LCTKAKLLNHLKLHDVQKPNV 290
LCT N+ KL D+Q+PNV
Sbjct: 127 LCTNLGAANNYKLKDLQQPNV 147
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 380 DASQFECYRYPRNPCIFSLFSARSLGFRYN 291
DAS E RY R+P S FS + G RY+
Sbjct: 197 DASDTERNRYGRSPSPHSRFSEKPRGERYD 226
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 195 MTHECPICKAQLCTKAKLLNHLKLHD 272
M + CP CK C + H +LH+
Sbjct: 387 MRYACPSCKNHFCLDCDVFAHEQLHE 412
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 274 YKNQM*LYRKPRLRAEKSEKMQGFRGYL*HSNWLASSMLIKGQF 405
+ + M +PR R EK + QGF+GY + A + G +
Sbjct: 339 FASSMATMHEPRARREKRFRGQGFQGYFAGEKYSAIPNAVAGLY 382
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +3
Query: 126 NHCQRVYSRNSNLKQHIMIKHVRMTHECP-ICKAQLCTKAK 245
N S N +L HI+ +R T E P C A L + K
Sbjct: 71 NCLSNALSNNPSLHVHILADQLRCTRESPGCCSASLLMQLK 111
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 132 CQRVYS-RNSNLKQHIMIKHVRMTHECPICKAQLCTKAKLLNHLKLHDVQK 281
CQR+++ R +N + +++ + + H+C L T L ++LH ++K
Sbjct: 495 CQRLWNERTNNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLKK 545
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 108 QFKCPYNHCQRVYSRNSNLKQHIMIKHVRMTHECPIC 218
QF CP + C +LK H +KH + C +C
Sbjct: 170 QFNCPEDACDITCKGWFDLKLHAKVKHHKFF--CDLC 204
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -1
Query: 191 HMFYHNMLF*VTVP*IDSL--AMIIRTFKLFIFTCEL*MYLHMSHYMN-PLFEVSSAII 24
++F+H L +TV ID AM+ TF LF C +Y + +N + ++S+ +I
Sbjct: 41 YVFHHFRL--ITVEKIDVFINAMVPSTFALFCMACPYLLYTAVDALLNKDVIQMSALLI 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,179
Number of Sequences: 5004
Number of extensions: 45362
Number of successful extensions: 159
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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