Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J06
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 112 2e-26
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 50 3e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 48 6e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 48 8e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 47 1e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 2e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 1e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 43 2e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 5e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 41 1e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 40 2e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 5e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.001
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 38 0.001
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 37 0.001
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 37 0.001
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 37 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.003
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.003
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.005
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.010
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.010
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 34 0.010
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 34 0.014
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.014
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.018
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.018
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 33 0.018
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.024
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 31 0.074
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.30
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.30
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.52
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 0.69
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 1.2
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 1.6
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 1.6
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 2.1
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 2.8
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 2.8
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 3.7
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 3.7
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 8.4
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 112 bits (270), Expect = 2e-26
Identities = 53/126 (42%), Positives = 81/126 (64%), Gaps = 5/126 (3%)
Frame = +1
Query: 10 GRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKKAKARH-----GKIFVGGLSSEIS 174
GRSRGF F+ FK P +++VM+ EH ++ K +DPK+A R K+FVGG+ + +
Sbjct: 201 GRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCT 259
Query: 175 DDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDV 354
++E +NFF+ FG +++ + DK + +GF F+T+E+E V + P TI GK V+V
Sbjct: 260 EEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEV 319
Query: 355 KRATPK 372
KRATPK
Sbjct: 320 KRATPK 325
Score = 70.5 bits (165), Expect = 1e-13
Identities = 29/81 (35%), Positives = 55/81 (67%)
Frame = +1
Query: 136 GKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLK 315
GK+F+GGL+ E +DD ++++F FG +++ + D T + +GF F+TF++ + VNE++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 316 TPKQTIGGKEVDVKRATPKPD 378
+ + + GK +D KRA P+ +
Sbjct: 222 SKEHHLDGKIIDPKRAIPREE 242
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 49.6 bits (113), Expect = 3e-07
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Frame = +1
Query: 52 DSIDKVMAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 231
D ++ + A H + P + +A ++FVG LS+ EI++ F G + +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 232 PFDKTKNQRK----GFCFITFESEQVVNELLKTPK-QTIGGKEVDVKRATP 369
PF + + + G F+TF +++ V++ ++T +T+ +E+ V++A P
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARP 126
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 48.4 bits (110), Expect = 6e-07
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 139 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELLK 315
++F+ L+ ++D++K+ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 316 TPKQTIGGKEVDV 354
+ G+ + V
Sbjct: 384 LDAKPFQGRLLHV 396
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 48.0 bits (109), Expect = 8e-07
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +1
Query: 82 EHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRK 261
E TI K + K + + G ++VG L + +++ +FS FG ++ + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 262 GFCFITFESEQVVNELLKT 318
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 47.2 bits (107), Expect = 1e-06
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Frame = +1
Query: 4 RGGRSRGFAFIVFKAPDSIDKVMAA-GEHTINSKKVD-----PKKA------KARHGK-- 141
+ GRS+G+ ++ F+ P++ +AA G I+ + V+ P+ A + R G
Sbjct: 299 QSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFG 358
Query: 142 ---------IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQ 294
+FVG LS ++D++ F G+I + +P D + KGF ++TF
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 295 VVNELLKTPKQTIGGKEVDVKRATPK 372
+ ++ I G+ + +TP+
Sbjct: 419 SAKKCVEMNGHFIAGRPCRLDFSTPR 444
Score = 39.5 bits (88), Expect = 3e-04
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVN-ELLKT 318
+FVG LS + D + F +G I+ + D + KG+ ++ FE+ + +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 319 PKQTIGGKEVDVKRATPKP 375
+ I G+ V++ + P+P
Sbjct: 325 GTKEIDGRMVNLDLSNPRP 343
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.4 bits (105), Expect = 2e-06
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Frame = +1
Query: 61 DKVMAAGEHTINSKKVD---PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 231
D+V E T KK P+ ++ +FV G++S + +DE++ FS FG + V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 232 PFDKTKNQRKGFCFITFES-EQVVNELLKTPKQTIGGKEVDVKRA 363
+ +GF F++F + E+ + + Q G+ ++V++A
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +1
Query: 112 PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMP 234
P+ A + +FVGGLS +S++E+K F NFG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.0 bits (99), Expect = 1e-05
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQ 294
I++G L ++++D+I FS FG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 43.2 bits (97), Expect = 2e-05
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Frame = +1
Query: 13 RSRGFAFIVF-------KAPDSIDKVMAAGEHT-INSKKVDPKKAKARHGKIFVGGLSSE 168
RS G+A++ F KA D ++ + G I + DP K G +F+ L
Sbjct: 119 RSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPA 178
Query: 169 ISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLK 315
I + + + FS FG I+ ++ D+ N KG+ F+ F+S + N ++
Sbjct: 179 IDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIE 226
Score = 24.6 bits (51), Expect = 8.4
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +1
Query: 10 GRSRGFAFIVFKAPDSIDKVM 72
G+S+GF F+ + P+ +K +
Sbjct: 401 GKSKGFGFVCYTTPEEANKAV 421
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 41.9 bits (94), Expect = 5e-05
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Frame = +1
Query: 82 EHTINSKKVDPKKAKARHGK-------IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFD 240
+H++++ K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 241 KTKNQRKGFCFITF--ESEQVVNELLK 315
KT ++KG+ F+ F V+++ LK
Sbjct: 127 KTSGRQKGYAFVEFINPKTDVISKALK 153
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 40.7 bits (91), Expect = 1e-04
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNE-LLKT 318
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V++ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 319 PKQTIGGKEVDVKRA-TPKP 375
K+ G+ + + RA + KP
Sbjct: 332 EKKMPEGRTLRIMRAKSTKP 351
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 39.9 bits (89), Expect = 2e-04
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Frame = +1
Query: 94 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNI-------------IEVEMP 234
NSK P + + I+VG + S +SD+EI FS +G + E P
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKP 62
Query: 235 FDKTKNQRKGFCFITFESEQVVNELLKTPK-QTIGGKEVDVKRATPKP 375
F KN + + F+ F + + + E+LK K T+G +++ +K P
Sbjct: 63 FKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 181 EIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDVKR 360
++++ FS FG+I+ + KG+ F+ F Q+ E K T+ G V KR
Sbjct: 399 QLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF--RQI--EAAVRAKDTLNGMMVGKKR 454
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 5e-04
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 321
+FVGGL+S +S+ +++ F FG I+ +++PF KG F+ + + + + T
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG------KGCGFVQYSEKSAAEKAINTM 352
Query: 322 KQTIGG 339
+ + G
Sbjct: 353 QGALVG 358
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 37.5 bits (83), Expect = 0.001
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELLKT 318
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 319 PKQTIGGKE--VDVKR 360
+ G+E V +KR
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 37.5 bits (83), Expect = 0.001
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +1
Query: 55 SIDKVMAAGEHTINSKKVDPKKAKA--RHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVE 228
SI ++ A + I K D + A + ++VG LS ++++I FS G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 229 MPFDKTKNQRKGFCFIT-FESEQVVNEL 309
M D+ GFCF+ FE++ ++ L
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSL 90
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 37.1 bits (82), Expect = 0.001
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +1
Query: 139 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTK-NQRKGFCFITFESEQVVNELLK 315
+I+VGGLSS I ++++ FS FG++ +E+ T + F ++ F +++ + K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 316 T--PKQTIGGKEVDVKRATP 369
+ T G ++ ++ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 115 KKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 282
K+ + + V LS + ++E+++ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.7 bits (81), Expect = 0.002
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELL 312
++VG + ++ +E+++ F++ G++ V + DK KGF +I F E V N LL
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 321
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 322 K-QTIGGKEVDVKRATPK 372
K + + G+ + + ATP+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 31.1 bits (67), Expect = 0.097
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +1
Query: 55 SIDKVMAAGEHTINSKKVDP--KKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVE 228
++D V +G+ + + ++ + + +FV L E ++ E+ N F FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 229 MPFDKTKNQRKGFCFITFESEQVVNELLKTPKQ 327
+ D ++ G FI F E+ L+ Q
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLEMASQ 340
Score = 25.0 bits (52), Expect = 6.4
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 7 GGRSRGFAFIVFKAPDSIDKVMAAGEHT-INSKKVDPKKAKARHGKIFVGGLSSEISDDE 183
GGR GFAF+ K + ++ M + T I+ + + A ++ L S++E
Sbjct: 144 GGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDA-FEATTLKDASSEEE 202
Query: 184 IKNFFSNFGNIIEVE 228
K F S+ G+ I E
Sbjct: 203 NKEFVSDEGHSIVTE 217
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/75 (21%), Positives = 39/75 (52%)
Frame = +1
Query: 148 VGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQ 327
VG LS +++++++ +FF + + + D + +GF ++ FE+ ++ L +
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 328 TIGGKEVDVKRATPK 372
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 13 RSRGFAFIVFKAPDSIDKVMAAGEHTINSKKVDPKKAKAR 132
RSRGF ++ F+ D++ +A + + V A+ R
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 79 GEHTINSKKV-DPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQ 255
GEHT + + +K + +++VG LS ++ E+K F GN++ E+ +
Sbjct: 46 GEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI-LNLPNGL 104
Query: 256 RKGFCFITFESEQVVNELLKT 318
KG I + + + +KT
Sbjct: 105 SKGCAIIEYSTAEEARTAIKT 125
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.010
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 139 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFES 288
KI++ L + +D++ FG+++ ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.3 bits (75), Expect = 0.010
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNE 306
+FV L+ D++++ FS FG II ++ DK + FI F++++ V +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 34.3 bits (75), Expect = 0.010
Identities = 15/79 (18%), Positives = 40/79 (50%)
Frame = +1
Query: 139 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKT 318
++FV +S ++ ++++ F +FG + ++++ + G C I+F+ ++ +
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
Query: 319 PKQTIGGKEVDVKRATPKP 375
K I ++ + R + KP
Sbjct: 155 AK--IAVQQANGLRFSGKP 171
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 33.9 bits (74), Expect = 0.014
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT-FESEQVVNELLKT 318
+FVG + ++S+ ++ F+ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 319 PKQTIGGKEVDVKRATPKP 375
+G +++ V+ + P
Sbjct: 69 NNSELGPRKIRVEFPSNDP 87
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.9 bits (74), Expect = 0.014
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 321
+ V L S+IS++E+K FF + GNII + + D K+ + I F V
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVK--VAQIEFSETSEVLAAKTRD 649
Query: 322 KQTIGGKEVDVK 357
++I G E+ V+
Sbjct: 650 LKSIRGHEISVQ 661
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.5 bits (73), Expect = 0.018
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 282
+FVG L E +D ++K F G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.018
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 321
+FV L++ ++ E+ +FF G + + ++ DK + KG ++ F E V +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 322 KQTIGGKEVDVK 357
+ + G V V+
Sbjct: 302 GKRLLGLPVIVQ 313
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.5 bits (73), Expect = 0.018
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +1
Query: 94 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCF 273
+ K ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 282 HDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 274 ITFESEQ 294
FE E+
Sbjct: 342 ACFEEEK 348
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 33.1 bits (72), Expect = 0.024
Identities = 17/88 (19%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +1
Query: 115 KKAKARHGKIF-VGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESE 291
+ AK+ G I V G+ E +++++++ F++FG + + + D+ KG+ I + +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATL 61
Query: 292 QVVNELLKTPKQTIGGKEVDVKRATPKP 375
+ + + ++ ++++V A +P
Sbjct: 62 EQAQKAVDEKNLSLLDEKLEVDFAFLEP 89
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 31.5 bits (68), Expect = 0.074
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 163 SEISDDEIKNFFSNFGNIIEVEM---PFDKTKNQRKGFCFITFESEQVVNELL 312
S +++D + ++FSN G EVEM F+KT +G F + +Q + + L
Sbjct: 477 SNLTNDSVNSYFSNIGG-SEVEMKHSAFEKTLESSRGILFSLSQVQQALRQQL 528
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.30
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = +1
Query: 70 MAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTK 249
M A E K KK + I+VG L S ++ F FGN + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 250 NQRKG------FCFITFESE 291
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 142 IFVGGLSSEI--SDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT----FESEQVVN 303
+FV L I + +++ FS FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 304 EL 309
L
Sbjct: 481 TL 482
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.5 bits (63), Expect = 0.30
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 282
++VG + E++++++ + F G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.52
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKT- 318
+FVG L + + + + FS G +++ + KG+ F++++S + + ++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 319 PKQTIGGKEVDVKRA 363
Q + K + V A
Sbjct: 161 NNQFLMNKPITVSYA 175
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.69
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +1
Query: 172 SDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVD 351
+++ I++FFS FG + +VE+ N C + F S + N +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 352 V 354
+
Sbjct: 309 I 309
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +1
Query: 106 VDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFE 285
+ P K +F+GG++ + + +++ F FG++ + + + K F E
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAE 455
Query: 286 SEQVVNELLKTPKQTIGGK 342
QV E + TI K
Sbjct: 456 KAQVAMENVPFADTTIRTK 474
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +1
Query: 160 SSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFES 288
+ +++D +++ +S+FG + V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 293 CSDSNVMKQNPFLWFFVLSKGISTSIIFPKLLKKFFISSSEI 168
CS SN +K + +L+ L+ G+ + P+LL + S+I
Sbjct: 7 CSSSNTIKVSIYLFLHTLTYGLLNYHLNPRLLASTGVVESDI 48
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 231
+F+G L S + EI+ F FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 19 RGFAFIVFKAPDSIDKVMAAGEHTINSKK 105
RGFA IVF A S ++V G H +N K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 231
+F+G L + I++DEI+ FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 3.7
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 142 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLK 315
I+VG L S++E+K FS + + F +TK CF+ FE+ E LK
Sbjct: 428 IYVGNLPPSTSEEELKVLFST--QVGYKRLCF-RTKGNGP-MCFVEFENIPYAMEALK 481
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 3.7
Identities = 7/31 (22%), Positives = 21/31 (67%)
Frame = +1
Query: 139 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 231
++FVG + + + +++ +FF +G I++ ++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL 35
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 4 RGGRSRGFAFIVFKAPDSIDK 66
R G++RGF F+ FK D K
Sbjct: 65 REGKTRGFGFVSFKDSDQFLK 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,754
Number of Sequences: 5004
Number of extensions: 29137
Number of successful extensions: 157
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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