Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J06
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   0.77 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   0.77 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 487 RSPGCPTADPRSRRGLRARPEPPCRRGPRARSY 389
           R+P    A+P ++RG    P P  RR  +   Y
Sbjct: 885 RNPALALAEPYNQRGTVVSPPPTKRRTMKVVKY 917


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 487  RSPGCPTADPRSRRGLRARPEPPCRRGPRARSY 389
            R+P    A+P ++RG    P P  RR  +   Y
Sbjct: 923  RNPALALAEPYNQRGTVVSPPPTKRRTMKVVKY 955


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 141 LAMPRLRLLRVNFLTVDSVLTSCHNLINRIWRFENYE 31
           L MP ++   VN   + +    C  LIN     EN++
Sbjct: 446 LQMPGVKFESVNIDKLYTYFDKCDTLINNAVAVENFK 482


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 141 LAMPRLRLLRVNFLTVDSVLTSCHNLINRIWRFENYE 31
           L MP ++   VN   + +    C  LIN     EN++
Sbjct: 446 LQMPGVKFESVNIDKLYTYFDKCDTLINNAVAVENFK 482


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 209 PKLLKKFFISSSEISLLRPPTKILPCLAFAFLGSTFLLLIVCSPAAITLSI 57
           P L   F I+    +L      I+PC+  +FL      L   S   +TLSI
Sbjct: 230 PYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSI 280


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 209 PKLLKKFFISSSEISLLRPPTKILPCLAFAFLGSTFLLLIVCSPAAITLSI 57
           P L   F I+    +L      I+PC+  +FL      L   S   +TLSI
Sbjct: 230 PYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSI 280


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 209 PKLLKKFFISSSEISLLRPPTKILPCLAFAFLGSTFLLLIVCSPAAITLSI 57
           P L   F I+    +L      I+PC+  +FL      L   S   ++LSI
Sbjct: 226 PYLDITFNITMRRKTLFYTVNLIIPCMGISFLTVLVFYLPSDSGEKVSLSI 276


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 83  SPAAITLSIESGALKTM 33
           SPA  ++S++SG++ T+
Sbjct: 555 SPAIESISVDSGSINTV 571


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 143 ILPCLAFAFLGSTFLLLIVCSPAAITLSI 57
           I+PC+  +FL      L   S   ++LSI
Sbjct: 244 IIPCVGISFLSVLVFYLPSDSGEKVSLSI 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,406
Number of Sequences: 438
Number of extensions: 2059
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)