Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J05
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    30   1.1  
U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 366 YLIFNIFCSHLVIIFEMQNFMICNNQRELCKL 461
           +L+F IFCS   + F+ QN     +   +C++
Sbjct: 141 FLVFQIFCSRFPVSFQFQNKFFLRHLISICRI 172


>U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical
           protein C26B2.8 protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 33  VFLLSIIPEFGICARYGDRL 92
           VF++ ++P  G+CARY   L
Sbjct: 60  VFIMLLLPAAGLCARYNSHL 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,548,874
Number of Sequences: 27780
Number of extensions: 203259
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)