Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J04
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0325 + 2275922-2276013,2276467-2276500,2276810-2276932,227...    29   1.1  
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299     29   1.5  
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296...    26   8.1  
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044...    26   8.1  

>07_01_0325 +
           2275922-2276013,2276467-2276500,2276810-2276932,
           2277334-2277401,2277494-2277585,2278662-2278987,
           2280771-2281142
          Length = 368

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 211 SPRSICWGETTLEINTQAVALGALSPSCSYSFVTAATYYNVSYAMFT 71
           SP  +CW    +E  T+    GA   SC +  V +  +Y +  A  T
Sbjct: 199 SPLVLCWATLKIEYQTEQERHGARVWSCQFVIVRSCGHYVLPVAKVT 245


>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
          Length = 556

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 174 SSVVSPQHIERGEDAFI*FILLDYIRGRTRSSPVLFIVRNI 296
           +SV +   I RG +    F ++ + RGR RS PV  IVR +
Sbjct: 204 NSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVSSIVREV 244


>08_01_0331 +
           2966362-2966477,2966561-2966924,2966949-2967050,
           2967127-2967209,2967306-2967422,2968085-2968187,
           2968259-2968928,2969239-2969393,2969529-2969580,
           2969734-2969825
          Length = 617

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 233 NKLYKSVFTALNMLGRNDARDQ 168
           NK YK +    N+LGR+++R Q
Sbjct: 260 NKSYKELMIQCNVLGRSESRSQ 281


>04_04_1584 +
           34601927-34602144,34603324-34603510,34604239-34604496,
           34604866-34604965,34608523-34608639,34608704-34608804,
           34609035-34610141
          Length = 695

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 156 TACVLISSVVSPQHIERGEDA 218
           TA VL+SS  SP H+ R +DA
Sbjct: 162 TAAVLLSSSSSPIHLPRRDDA 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,094,462
Number of Sequences: 37544
Number of extensions: 128799
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)