Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J04
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106581-6|ABC48242.1|  386|Caenorhabditis elegans Hypothetical ...    30   0.59 
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   2.4  
Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    26   7.3  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    26   7.3  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    26   7.3  

>AF106581-6|ABC48242.1|  386|Caenorhabditis elegans Hypothetical
           protein VC5.6 protein.
          Length = 386

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 130 KTAIAHRARQPAC*SRASFLPNILSAVKTLLYN 228
           K  ++ +A  PAC S+ S LPN L    T  YN
Sbjct: 94  KDEVSEKALVPACYSKVSILPNELQCSSTYDYN 126


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 178  LEINTQAVALGALSPSCSYSFVT 110
            L+++TQ +  GAL P CS+S ++
Sbjct: 1879 LDLSTQILRTGALDPKCSHSMLS 1901


>Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical
           protein C30H6.6 protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 172 INTQAVALGALSPSCSYSFVTAATYYNVS 86
           INT  +  G LS  C Y+ + AA+  N+S
Sbjct: 344 INTGHITYGELSSFCLYAVLAAASLSNIS 372


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 22/84 (26%), Positives = 31/84 (36%)
 Frame = -3

Query: 253 PRI*SNRINYIKASSPRSICWGETTLEINTQAVALGALSPSCSYSFVTAATYYNVSYAMF 74
           PR  +     IK +S + +  G TTL   T + AL A   SC  +   +     V   MF
Sbjct: 587 PRFTTTLYTIIKEAS-QGLRVGSTTLSRQTVSSALAAALESCQSTQNISDKEKKVKKLMF 645

Query: 73  TTDXXXXXXXXXX*EAHAEASNPL 2
           T D            +  +   PL
Sbjct: 646 TLDALTSTGSTPNVSSRMQFVQPL 669


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 22/84 (26%), Positives = 31/84 (36%)
 Frame = -3

Query: 253 PRI*SNRINYIKASSPRSICWGETTLEINTQAVALGALSPSCSYSFVTAATYYNVSYAMF 74
           PR  +     IK +S + +  G TTL   T + AL A   SC  +   +     V   MF
Sbjct: 587 PRFTTTLYTIIKEAS-QGLRVGSTTLSRQTVSSALAAALESCQSTQNISDKEKKVKKLMF 645

Query: 73  TTDXXXXXXXXXX*EAHAEASNPL 2
           T D            +  +   PL
Sbjct: 646 TLDALTSTGSTPNVSSRMQFVQPL 669


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 22/84 (26%), Positives = 31/84 (36%)
 Frame = -3

Query: 253 PRI*SNRINYIKASSPRSICWGETTLEINTQAVALGALSPSCSYSFVTAATYYNVSYAMF 74
           PR  +     IK +S + +  G TTL   T + AL A   SC  +   +     V   MF
Sbjct: 587 PRFTTTLYTIIKEAS-QGLRVGSTTLSRQTVSSALAAALESCQSTQNISDKEKKVKKLMF 645

Query: 73  TTDXXXXXXXXXX*EAHAEASNPL 2
           T D            +  +   PL
Sbjct: 646 TLDALTSTGSTPNVSSRMQFVQPL 669


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,096,214
Number of Sequences: 27780
Number of extensions: 115566
Number of successful extensions: 257
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)