Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J04
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   2.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   2.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.1  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 261 RSSPVLFIVRNIIFNLEFW 317
           R S ++F V  IIFN+ +W
Sbjct: 446 RRSRIVFPVAFIIFNILYW 464


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 228 FILLDYIRGRTRSSPVLFIVRNIIF 302
           F+L  ++R RT+  P  F    II+
Sbjct: 23  FVLFSFLRTRTKLQPTYFHHTYIIY 47


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 228 FILLDYIRGRTRSSPVLFIVRNIIF 302
           F+L  ++R RT+  P  F    II+
Sbjct: 23  FVLFSFLRTRTKLQPTYFHHTYIIY 47


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 238 NRINYIKASSPRSICWGE 185
           NRI +I A+SP  I  G+
Sbjct: 17  NRITHILANSPAIIILGQ 34


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 238 NRINYIKASSPRSICWGE 185
           NRI +I A+SP  I  G+
Sbjct: 55  NRITHILANSPAIIILGQ 72


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 21  ACASHYVYIMSVI 59
           AC++  VY+MSV+
Sbjct: 158 ACSTATVYVMSVV 170


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 254 EDAILPGFIYCTQY 295
           ED+++P  +Y T Y
Sbjct: 801 EDSVIPRILYLTWY 814


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,245
Number of Sequences: 438
Number of extensions: 1532
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)