Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J03
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   3.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.6  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    25   6.1  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   8.1  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 143 CEPNYNHSTVIRIYDFWLS 87
           CEP YN S+++R  D + S
Sbjct: 453 CEPEYNRSSLVRASDVFTS 471


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 26  TSLATTSVLRTPSDSSGRSAPTTRSHKFV*PSNDCSLV 139
           TSL++++    P+ SS  +A T+ S   V PS+  S++
Sbjct: 12  TSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSML 49


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -3

Query: 382 ET*KQRNHSVYRRYIGYRAQILTIRHIKPKYTGFNSRYIYVCTVHTLGVSRVITRSHTSA 203
           ET     H+V  +    +    +I+ +K  Y   NS+ IY      LG ++ I R    A
Sbjct: 279 ETVNSAGHTVREQLFEVKEFTRSIKDLKDLYEKANSKDIYDKDSEILGEAKAILRLADPA 338

Query: 202 GTY*LNFDDLL-IITKTKKK 146
               L  +D   I++K K K
Sbjct: 339 NYSDLKDEDAQNILSKYKVK 358


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 319 IFGLCILCTF-GKPSGCVVSMFLSCCMY 399
           +F LC+L     +PS   VS+F+SC  Y
Sbjct: 606 LFTLCLLIVNQARPSQWPVSIFISCAGY 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,214
Number of Sequences: 5004
Number of extensions: 37397
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)