Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J02
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 86 3e-18
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 28 1.2
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 27 1.6
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 27 2.8
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 26 3.7
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 3.7
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 26 4.8
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 25 6.4
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 6.4
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 6.4
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 8.5
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 8.5
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 86.2 bits (204), Expect = 3e-18
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Frame = +1
Query: 100 MMRRLRRVNVDHFHVGWYQSADVGNFLSQSL-LESQYHYQTSIEESVVVIYDTKKSARGF 276
M+ RL+ + HVGWY A V +FLS +E+QY YQ + S+ +YD +S+ G
Sbjct: 91 MLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFFVETQYAYQKANPNSIAFLYDLSQSSNGT 150
Query: 277 LTLKAYRLTPQAIAMYKEGDYTPDALRNLKIGYESLFIEVPIVIRNSPLTNIMISELTE 453
L ++AY+LTP+ +A ++E +T +L + + ++ E+PIVI NS L ++ L+E
Sbjct: 151 LYMRAYQLTPEFMAAHEEKTWTASSLNSHNLTPSNVIRELPIVIHNSHLATCLLHSLSE 209
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 97 PIGTPLHPLCHHASERGSNWLSLNDSPQLNL 5
P+ P+ LC+H+S+ + W D+ QL L
Sbjct: 187 PVLAPVIDLCNHSSKSNAKWSFSEDAMQLYL 217
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 174 VSYICTLVPSNMKMVNIDPAEPSHHVQLVLLFI---HCVIMLRKGEAIGYL 31
V YI VPSN+ M I+P +QL + + H V+ + G A Y+
Sbjct: 138 VGYIIFEVPSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYV 188
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 13 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNV 129
+ +NRLE N F FP D + EY M R+L +NV
Sbjct: 7 IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV 49
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -2
Query: 276 ESPSRLLSIIDNHHTLLN*GLIVIL*FKQRLTQEVSYICTLVPSNMKMVNIDPAEPSHHV 97
+SP LS I+N H LN + F + L L+ N K +++D + P + +
Sbjct: 705 KSPENYLSSINNGHHALNDNPPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWI 764
Query: 96 QLVL 85
L L
Sbjct: 765 SLCL 768
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 310 AIAMYKEGDYTPDALRNLKIGYESLFIEVPIVI 408
AIA+ ++G +T RN KI + ++ V IVI
Sbjct: 553 AIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVI 585
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 544 RRVPSNCAVDHQVQMRFPNQGTWTLPPRVS 455
R P NCA V FP+ G + P +VS
Sbjct: 237 REYPKNCAFSRSVLEIFPDPGKTSKPCQVS 266
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 115 GAFASCPIGTPLHP-LCHHASERGSNWLSL 29
G F + + L P LCH ++RG +W +L
Sbjct: 366 GIFLASLVSLFLEPSLCHFQADRGRDWCAL 395
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 31 EITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNV 129
++T + P H + + +++LD R RR+N+
Sbjct: 368 DLTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 223 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPDALRNLKIGY 375
+ + +VV YD K + F L+A TP+ E TP+ L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 511 DGQLRSLMERVDELNQEAIKFNRYQQLVV 597
DG++ L++R +L +E I + QQL++
Sbjct: 957 DGKMAPLLQRYWDLKREIINLQKRQQLLL 985
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Frame = -2
Query: 168 YIC-TLVPSNMK-----MVNIDPAEPSHHVQLVLL 82
++C T VP N+K M N +PA P H LV L
Sbjct: 192 FLCLTRVPDNVKSEEVAMANWEPAHPLHKSNLVTL 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,466
Number of Sequences: 5004
Number of extensions: 48750
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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