Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J02
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 142 2e-34
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 2.2
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 29 3.8
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049... 29 3.8
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 28 5.0
05_01_0009 - 64754-65073,65202-65469 28 6.6
02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817... 27 8.7
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 142 bits (344), Expect = 2e-34
Identities = 79/203 (38%), Positives = 116/203 (57%), Gaps = 5/203 (2%)
Frame = +1
Query: 7 GLVVENRLEITNCFPFPKHDDT----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGN 174
GL V + LE+TNCFPFP +D D YQL+MMR LR VNVD+ VGWYQS +G+
Sbjct: 63 GLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGS 122
Query: 175 FLSQSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPDAL 354
F + L+E+ +YQ +I V ++YD +S +G L LKA +LT + +Y+ T + L
Sbjct: 123 FQTVELIETFMNYQENIRRCVCIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLTGEKL 182
Query: 355 RNLKIGYESLFIEVPIVIRNSPLTNIMISELTEMIPEEE-GSKFLDLGTASVLDGQLRSL 531
R K+ + +F E+PI + NS L + ++EL P + L L TA ++ L L
Sbjct: 183 REKKLSWVDIFEEIPIKVSNSALVSAFMTELEPESPVSQCDFDRLKLSTAPFMERNLEFL 242
Query: 532 MERVDELNQEAIKFNRYQQLVVR 600
+ +D+L+ E KF Y + V R
Sbjct: 243 IGCMDDLSSEQNKFQYYYRNVSR 265
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 142 VGWYQSADVGNFLSQSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 297
VGWY+S + G + S +S +H ++ +++V D KSA G T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 393 SADSDPEFTANKHNDIGAHRDDTRGGRVQVP*FGNR 500
SA S+ E T K + A RD+T+G R+ P GN+
Sbjct: 260 SAASELEETNYKLAALKAQRDNTQGARIPYPTLGNK 295
>02_05_0256 +
27201483-27202499,27203297-27203375,27204617-27204946,
27205029-27205198
Length = 531
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 197 NHSITIKPQLRRVWWLSMILR 259
+H IT KP R+WW++ ++R
Sbjct: 246 HHIITTKPSSLRIWWVADLMR 266
>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
Length = 698
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/68 (38%), Positives = 34/68 (50%)
Frame = +1
Query: 343 PDALRNLKIGYESLFIEVPIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLDGQL 522
P LR + Y S+F E VI L N I+E E I EE+G ++G LD
Sbjct: 94 PHHLRTCLL-YLSVFPE-DYVIDKQQLINRWIAE--EFIHEEQGRSTYEVGERYFLDLID 149
Query: 523 RSLMERVD 546
RSL++ VD
Sbjct: 150 RSLIQPVD 157
>05_01_0009 - 64754-65073,65202-65469
Length = 195
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 388 IEVPIV-IRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLDGQLRSLMERVDELNQEA 564
I +P+ +RN+ MIS L P + D G L G++R L+ +VD++
Sbjct: 132 IRLPLTDVRNN--LQKMISSLLGRSPTATATASHDHGAKLALAGEMRGLLAKVDKMLSAT 189
Query: 565 IKFNRY 582
NR+
Sbjct: 190 TPANRH 195
>02_02_0239 -
8177152-8177445,8177821-8178207,8178717-8179715,
8179799-8179953,8180725-8180812,8180901-8181004,
8181327-8181549,8182251-8182335,8182425-8182816,
8182852-8183097
Length = 990
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 597 HDQLLVPVELNSLLVQLVDAFHQTAQLTIKYRCGSQIKELGPFL 466
+D+LLV +L S QL + F +T QL ++ I E P+L
Sbjct: 864 YDKLLVAGDLQSFGEQLRNNFEETKQLLLQVAGHKDILEGDPYL 907
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,774
Number of Sequences: 37544
Number of extensions: 318766
Number of successful extensions: 729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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