Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_J02
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...   136   1e-32
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    35   0.039
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z29115-3|CAA82361.1|  347|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score =  136 bits (328), Expect = 1e-32
 Identities = 71/203 (34%), Positives = 126/203 (62%), Gaps = 15/203 (7%)
 Frame = +1

Query: 19  ENRLEITNCFPFPKHDDTMDEE-----EYQ-------LDMMRRLRRVNVDHFHVGWYQSA 162
           ++RLEITNCFP  +++  MD++     +Y+       LDM+R+ R +N+D+  VG+YQS 
Sbjct: 57  DSRLEITNCFPTVRNEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSH 116

Query: 163 DVGNFLSQSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYT 342
             G   S  L+ES + YQ    E+VV+IYD  K+ +G L+L+A+RL+  A+ +  + D+ 
Sbjct: 117 QFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDWR 176

Query: 343 PDALRNLKIGYESLFIEVPIVIRNSPLTNIMISELT---EMIPEEEGSKFLDLGTASVLD 513
           P+ ++   + Y+++F E+PI+I++S L N+++SEL+       ++  ++  DLG+   L+
Sbjct: 177 PELVKAAGLTYQNMFEELPIIIKSSYLNNVLMSELSLAKSCSSDKYSTRHFDLGSKKSLE 236

Query: 514 GQLRSLMERVDELNQEAIKFNRY 582
             +R++M  VDELN+      +Y
Sbjct: 237 KSVRAMMANVDELNKSIQSLTKY 259


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +1

Query: 7   GLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNF 177
           G   +  +++TNCF  P    +DD   ++++   M+  L++ + +   VGW+ +    + 
Sbjct: 43  GYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLT--TSDI 100

Query: 178 LSQSLLESQYHYQTSIEES 234
            S  L+   Y+ +   E S
Sbjct: 101 TSSCLIYHDYYVRVITEAS 119


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +1

Query: 217 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYKEGDYTPDALRNLKIGYESLFI 390
           T+I ES    I+ T+ S    LTL + + TP A IA   E + TP    ++ + ++   +
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQEREL 534

Query: 391 EVPIVIRNSPLTNIMISELTEMIPEEEGS 477
            V ++     + NI   ++   +  + GS
Sbjct: 535 PVSMMSTTVNVENIKGEQIPVNVFFDSGS 563


>Z29115-3|CAA82361.1|  347|Caenorhabditis elegans Hypothetical
           protein T26G10.4 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 346 DALRNLKIGYESLFIEVPIVIRNSPLTNIM--ISELTEMIPEEEGSK 480
           DALRNL  G +S   ++ IV++N  L  ++    +  E +  E+G K
Sbjct: 234 DALRNLASGGDSPLFKIKIVVKNKKLAVLVQATEDSNEKLFTEDGVK 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,610,893
Number of Sequences: 27780
Number of extensions: 276010
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)