Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_J01
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 164 2e-41
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 164 2e-41
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 138 2e-33
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 126 5e-30
02_02_0355 + 9312814-9313650 30 0.83
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 27 7.7
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666... 27 7.7
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 27 7.7
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 164 bits (399), Expect = 2e-41
Identities = 79/116 (68%), Positives = 93/116 (80%)
Frame = +2
Query: 62 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 241
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 242 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQ 409
S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA Q
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQ 115
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 164 bits (399), Expect = 2e-41
Identities = 79/116 (68%), Positives = 93/116 (80%)
Frame = +2
Query: 62 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 241
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 242 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQ 409
S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA Q
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQ 115
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 138 bits (334), Expect = 2e-33
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +2
Query: 158 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 337
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 338 KYCAEIAHGVSSKKRKAIVERAQQ 409
YCAEIAH VS+KKRK IVERA Q
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQ 182
Score = 29.9 bits (64), Expect = 0.83
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 62 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 154
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 126 bits (305), Expect = 5e-30
Identities = 59/94 (62%), Positives = 74/94 (78%)
Frame = +2
Query: 56 FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 235
++M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIG
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIG 379
Query: 236 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 337
YGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>02_02_0355 + 9312814-9313650
Length = 278
Score = 29.9 bits (64), Expect = 0.83
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +1
Query: 220 DAQHWLWFK*EDPSHATQRFS*SLGPQRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSR 396
D+Q WL +D HA P+ GD D + E R R W EG+ R
Sbjct: 3 DSQQWLHGDGDDVEHAAAMTMTEAAPRDDEPGDRRDVDDENERRQRRW----TAEGFGR 57
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 26.6 bits (56), Expect = 7.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 275 RWVACDGSSYLNHNQC 228
RW+ CDG S+ H C
Sbjct: 209 RWIGCDGCSHWTHAGC 224
>10_08_0371 +
17265691-17265788,17265873-17265971,17266586-17266628,
17267250-17267321,17267400-17267495,17267609-17267842,
17267914-17268097,17268247-17268358,17268447-17268533,
17268703-17268841,17269628-17269718,17270045-17270154,
17270309-17270413,17270982-17271055,17271379-17271454,
17271786-17272022,17272419-17272490,17273082-17273153,
17273240-17273304,17273306-17273383,17273384-17273486,
17273769-17273858,17274873-17274980,17275063-17275113,
17276126-17276203,17276284-17276346,17276944-17277140,
17277243-17277312,17277640-17277828
Length = 1030
Score = 26.6 bits (56), Expect = 7.7
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +3
Query: 177 VSTTEYVGASRVNT*-CPTLVMVQIRRPVTCYPAVFVKSW---STTFANWRS**CRTGNT 344
V+ T Y G + T C L+ +RR TC V + SW + FA+ RS TG
Sbjct: 607 VALTTYQGEIELQTLTCQKLLATVVRRKHTCTYVVQLDSWRDLTRAFASGRSLFSLTGRL 666
Query: 345 AR 350
R
Sbjct: 667 QR 668
>09_06_0352 + 22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 399 RSTIAFRFFEETPCAISAQYFLFCIIRISSSRTLW 295
R+T+AF+ F T A+ F+ I ++ S+ +LW
Sbjct: 900 RNTLAFKGFGRTNKETVAELFVSLISKLLSAESLW 934
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,290,128
Number of Sequences: 37544
Number of extensions: 226174
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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