Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_I22
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 89 3e-19
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 44 8e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 40 1e-04
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.34
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 29 0.45
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 0.59
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.4
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 25 4.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.2
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 5.5
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 25 7.3
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 7.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 89.0 bits (211), Expect = 3e-19
Identities = 36/80 (45%), Positives = 55/80 (68%)
Frame = +1
Query: 217 NMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEA 396
N+ + +W + +L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 397 NFPDYVCQAIKSMGYKDPTP 456
FP+YV + +K +G++ PTP
Sbjct: 128 GFPNYVLKEVKQLGFEAPTP 147
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 244 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQ 420
++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 421 AIKSMGYKDPT 453
I S+GY+ PT
Sbjct: 432 VINSLGYEKPT 442
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 40.3 bits (90), Expect = 1e-04
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +1
Query: 328 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPT 453
+ + +++ G ++PNP+ ++EEA P + + +K + YK+P+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPS 273
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.34
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -2
Query: 426 YCLTHIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 307
+ ++++I + L ++F+ +R+ N+ ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 28.7 bits (61), Expect = 0.45
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 385 FEEANFPDYVCQAIKSMGYKDPTP 456
F+E D +C+A + +G+K PTP
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTP 71
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 0.59
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 343 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTP 456
V VSG ++ P+ F ++ Q IK GY PTP
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTP 194
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 307 PYEVEDYRNKHEVTVSGVE-VPNPI 378
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 4.2
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 289 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF-PDYVCQAIKSMGYKD 447
S L R Y E+Y + + N +EH + F D + Q +++GY +
Sbjct: 27 SALGRRGYHSENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSN 80
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 286 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYK 444
+ D P +DYR+ +T S + N + +E + Y+CQ + S+ +
Sbjct: 919 REAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLR 971
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 5.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 340 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPT 453
E+T S E N + FEE N + + + I + GY+ P+
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPS 45
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 313 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPT 453
E ED R + V ++ + IE F + + + +AIK MG++ T
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMT 113
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 247 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 375
S+ +NKD N K RS ++ + K + S VE+ P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,006
Number of Sequences: 5004
Number of extensions: 28904
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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